Miyakogusa Predicted Gene

Lj0g3v0360079.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0360079.1 Non Chatacterized Hit- tr|J3NDK3|J3NDK3_ORYBR
Uncharacterized protein OS=Oryza brachyantha GN=OB12G2,44.83,2e-17,
,CUFF.24793.1
         (326 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G55610.1 | Symbols:  | unknown protein; LOCATED IN: mitochond...   312   2e-85
AT5G55610.2 | Symbols:  | unknown protein; LOCATED IN: mitochond...   202   3e-52

>AT5G55610.1 | Symbols:  | unknown protein; LOCATED IN:
           mitochondrion, chloroplast, plastid, membrane; EXPRESSED
           IN: 25 plant structures; EXPRESSED DURING: 13 growth
           stages; Has 1807 Blast hits to 1807 proteins in 277
           species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
           - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
           (source: NCBI BLink). | chr5:22525981-22527858 FORWARD
           LENGTH=329
          Length = 329

 Score =  312 bits (799), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 165/332 (49%), Positives = 226/332 (68%), Gaps = 15/332 (4%)

Query: 1   MAGVAILLDLWRKNQNLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRALFGS---SV 57
           MAG+A++LDL +K+Q+                                 R LFGS    V
Sbjct: 1   MAGIALVLDLLKKSQS------KNTLHSSSFYSASAAAVSAAASAPFASRFLFGSFEPRV 54

Query: 58  AHCDAGAALSEDYISSIQSASERIFNYDSLRH--STKQYNVELKPLFSAFELRAFAMTSI 115
           A+CDA AA+ +DY+ +I+  S  +     L +   +K+YN++ KP+ SAFE RA AMT++
Sbjct: 55  AYCDAAAAIDDDYLGAIRKMSADVLQRQPLAYISRSKEYNIQPKPVLSAFEFRALAMTTV 114

Query: 116 RSFLMFYLPLLEPRAEMEDDEDFLED--NQDHHVDLVVPLKKSVKQIIRETSVVTTRRIL 173
           RS LMFYLPLLEP+   EDD+DFL +   ++ H DL+VPLKKS KQI RET+VVTTRR+L
Sbjct: 115 RSLLMFYLPLLEPKTASEDDDDFLNNAAEENRHTDLIVPLKKSAKQIARETTVVTTRRVL 174

Query: 174 ERIAVHYVSQRMAWKLLKDVPRSATRKAARKMPTLVYFFSVSRTTFRGHMLGVAASWLIQ 233
           ER+A+ YVSQRMAWKLLKDVP+SA RKA R +PT VY F VS+TT RGH LG+AASW++Q
Sbjct: 175 ERLALSYVSQRMAWKLLKDVPQSALRKAQRGLPTHVYIFKVSQTTLRGHFLGIAASWVVQ 234

Query: 234 VGVDLYRFIKPMFKSKDEDIDG--DKTKQVGPLAPKIVIATIRCTSSLIFASIGAGIGAT 291
           VG+++YR + P  K ++E+ +   + ++Q   L  K+V  T+RC +SL+FA+IGAGI + 
Sbjct: 235 VGIEIYRCVFPNVKPEEEEEEEKVEISQQAKDLGNKVVGITVRCGASLVFAAIGAGICSC 294

Query: 292 IVRPSLGQWIGCAVGDLTGPIIVACCLDQVFQ 323
           ++RPS GQWIGCA+GDL GP++V+ CL +  Q
Sbjct: 295 LIRPSTGQWIGCALGDLAGPMVVSVCLQKTLQ 326


>AT5G55610.2 | Symbols:  | unknown protein; LOCATED IN:
           mitochondrion, plastid, membrane; EXPRESSED IN: 25 plant
           structures; EXPRESSED DURING: 13 growth stages; Has
           35333 Blast hits to 34131 proteins in 2444 species:
           Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi -
           991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610
           (source: NCBI BLink). | chr5:22525981-22527479 FORWARD
           LENGTH=281
          Length = 281

 Score =  202 bits (514), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 115/228 (50%), Positives = 149/228 (65%), Gaps = 13/228 (5%)

Query: 1   MAGVAILLDLWRKNQNLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRALFGS---SV 57
           MAG+A++LDL +K+Q+                                 R LFGS    V
Sbjct: 1   MAGIALVLDLLKKSQS------KNTLHSSSFYSASAAAVSAAASAPFASRFLFGSFEPRV 54

Query: 58  AHCDAGAALSEDYISSIQSASERIFNYDSLRH--STKQYNVELKPLFSAFELRAFAMTSI 115
           A+CDA AA+ +DY+ +I+  S  +     L +   +K+YN++ KP+ SAFE RA AMT++
Sbjct: 55  AYCDAAAAIDDDYLGAIRKMSADVLQRQPLAYISRSKEYNIQPKPVLSAFEFRALAMTTV 114

Query: 116 RSFLMFYLPLLEPRAEMEDDEDFLED--NQDHHVDLVVPLKKSVKQIIRETSVVTTRRIL 173
           RS LMFYLPLLEP+   EDD+DFL +   ++ H DL+VPLKKS KQI RET+VVTTRR+L
Sbjct: 115 RSLLMFYLPLLEPKTASEDDDDFLNNAAEENRHTDLIVPLKKSAKQIARETTVVTTRRVL 174

Query: 174 ERIAVHYVSQRMAWKLLKDVPRSATRKAARKMPTLVYFFSVSRTTFRG 221
           ER+A+ YVSQRMAWKLLKDVP+SA RKA R +PT VY F VS+TT RG
Sbjct: 175 ERLALSYVSQRMAWKLLKDVPQSALRKAQRGLPTHVYIFKVSQTTLRG 222