Miyakogusa Predicted Gene

Lj0g3v0359979.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0359979.1 Non Chatacterized Hit- tr|B3RP07|B3RP07_TRIAD
Putative uncharacterized protein OS=Trichoplax
adhaere,28.73,2e-18,SURFEIT LOCUS PROTEIN 1,NULL; SURFEIT LOCUS
PROTEIN,NULL; seg,NULL; SURF1,Surfeit locus 1,CUFF.24777.1
         (343 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G17910.1 | Symbols: SURF1 | Surfeit locus 1 cytochrome c oxid...   351   4e-97
AT1G48510.1 | Symbols:  | Surfeit locus 1 cytochrome c oxidase b...   185   4e-47
AT1G48510.2 | Symbols:  | Surfeit locus 1 cytochrome c oxidase b...   178   5e-45

>AT3G17910.1 | Symbols: SURF1 | Surfeit locus 1 cytochrome c oxidase
           biogenesis protein | chr3:6133581-6136053 FORWARD
           LENGTH=354
          Length = 354

 Score =  351 bits (900), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 166/278 (59%), Positives = 214/278 (76%), Gaps = 1/278 (0%)

Query: 67  LLFLPGVMTFGLGTWQFFRREEKIKMLEYREKRLQMEPLNFSSAYPSNEELDSVEFRXXX 126
           LLFLPG +TFGLG+WQ  RREEK K LEY+++RL MEP+  +  +P ++ L+++EFR   
Sbjct: 77  LLFLPGAITFGLGSWQIVRREEKFKTLEYQQQRLNMEPIKLNIDHPLDKNLNALEFRRVS 136

Query: 127 XXXXXXXXXSIFVGPRSRSISGVTENGYYVITPLMPVHNYPNSVGFPILVNRGWVPRSWK 186
                    SI++GPRSRSISG+TENG++VITPLMP+    +S+  PILVNRGWVPRSW+
Sbjct: 137 CKGVFDEQRSIYLGPRSRSISGITENGFFVITPLMPIPGDLDSMQSPILVNRGWVPRSWR 196

Query: 187 DKFLEDSQDEQFADE-LPFPSQADGTRSWWRFWARKPVIIEDQAPSVTPIEVVGVVRGSE 245
           +K  E ++ E  A++     S ++  +SWW+FW++ PVI ++   +V P+EVVGV+RG E
Sbjct: 197 EKSQESAEAEFIANQSTKAKSPSNEPKSWWKFWSKTPVITKEHISAVKPVEVVGVIRGGE 256

Query: 246 KPSIFVPPNDPGSSQWFYVDVPGIARACGLPENTIYVEDINENVNPSNPYPVPKDVNTLI 305
            PSIFVP NDP + QWFYVDVP +ARA GLPENTIYVED++E+V+ S PYPVPKD+NTLI
Sbjct: 257 NPSIFVPSNDPSTGQWFYVDVPAMARAVGLPENTIYVEDVHEHVDRSRPYPVPKDINTLI 316

Query: 306 RSSVMPQDHLNYILTWYSLSAAVTFMAFKRLRQKSKRR 343
           RS VMPQDHLNY +TWYSLSAAVTFMA+KRL+ K  RR
Sbjct: 317 RSKVMPQDHLNYSITWYSLSAAVTFMAYKRLKAKPVRR 354


>AT1G48510.1 | Symbols:  | Surfeit locus 1 cytochrome c oxidase
           biogenesis protein | chr1:17934889-17936651 FORWARD
           LENGTH=384
          Length = 384

 Score =  185 bits (469), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 103/266 (38%), Positives = 159/266 (59%), Gaps = 18/266 (6%)

Query: 67  LLFLPGVMTFGLG-TWQFFRREEKIKMLEYREKRLQMEPLNFSSAYPSNEELDSVEFRXX 125
           L +L G  T+GLG T++F   + +++ L+ R++ L+M+P+  ++     ++LD + FR  
Sbjct: 57  LWYLVGFTTYGLGETYKFL--QTQVEHLDSRKQCLEMKPMKLNT----TKDLDGLGFRRV 110

Query: 126 XXXXXXXXXXSIFVGPRSRSISGVTENGYYVITPLMPVHNYPNSVGFPILVNRGWVPRSW 185
                     SI+VGP+ RS+S  +E G+YVITPL+P+ N PNS+  PILVNRGWVP  W
Sbjct: 111 VCKGIFDEQRSIYVGPKPRSMSKSSEIGFYVITPLLPIPNEPNSMKSPILVNRGWVPSDW 170

Query: 186 KDKFLED---------SQDEQFADELPFPSQADGTRSWWRFWARKPVIIEDQAPSVTPIE 236
           K+  LE          +++ + A++L    Q+  ++ W++     P+I+EDQ      +E
Sbjct: 171 KENSLESLGTGGLVAAAKESRKANKLLSSQQSLLSKFWYKL--NNPMIVEDQVSRAMHVE 228

Query: 237 VVGVVRGSEKPSIFVPPNDPGSSQWFYVDVPGIARACGLPENTIYVEDINENVNPSNPYP 296
           VVGVVR SE P I+   N P S  WFY+DVP +A A G  E+T+Y+E    +++ S  YP
Sbjct: 229 VVGVVRKSETPGIYTLVNYPSSLAWFYLDVPKLALAMGFGEDTMYIESTYTDMDESRTYP 288

Query: 297 VPKDVNTLIRSSVMPQDHLNYILTWY 322
           VP+DV  L RS  +P D+  Y + W+
Sbjct: 289 VPRDVENLTRSKDIPLDYHLYTVLWH 314


>AT1G48510.2 | Symbols:  | Surfeit locus 1 cytochrome c oxidase
           biogenesis protein | chr1:17934889-17936451 FORWARD
           LENGTH=303
          Length = 303

 Score =  178 bits (452), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 100/255 (39%), Positives = 154/255 (60%), Gaps = 18/255 (7%)

Query: 67  LLFLPGVMTFGLG-TWQFFRREEKIKMLEYREKRLQMEPLNFSSAYPSNEELDSVEFRXX 125
           L +L G  T+GLG T++F   + +++ L+ R++ L+M+P+  ++     ++LD + FR  
Sbjct: 57  LWYLVGFTTYGLGETYKFL--QTQVEHLDSRKQCLEMKPMKLNTT----KDLDGLGFRRV 110

Query: 126 XXXXXXXXXXSIFVGPRSRSISGVTENGYYVITPLMPVHNYPNSVGFPILVNRGWVPRSW 185
                     SI+VGP+ RS+S  +E G+YVITPL+P+ N PNS+  PILVNRGWVP  W
Sbjct: 111 VCKGIFDEQRSIYVGPKPRSMSKSSEIGFYVITPLLPIPNEPNSMKSPILVNRGWVPSDW 170

Query: 186 KDKFLED---------SQDEQFADELPFPSQADGTRSWWRFWARKPVIIEDQAPSVTPIE 236
           K+  LE          +++ + A++L    Q+  ++ W++     P+I+EDQ      +E
Sbjct: 171 KENSLESLGTGGLVAAAKESRKANKLLSSQQSLLSKFWYKL--NNPMIVEDQVSRAMHVE 228

Query: 237 VVGVVRGSEKPSIFVPPNDPGSSQWFYVDVPGIARACGLPENTIYVEDINENVNPSNPYP 296
           VVGVVR SE P I+   N P S  WFY+DVP +A A G  E+T+Y+E    +++ S  YP
Sbjct: 229 VVGVVRKSETPGIYTLVNYPSSLAWFYLDVPKLALAMGFGEDTMYIESTYTDMDESRTYP 288

Query: 297 VPKDVNTLIRSSVMP 311
           VP+DV  L RS+ +P
Sbjct: 289 VPRDVENLTRSTGVP 303