Miyakogusa Predicted Gene

Lj0g3v0359789.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0359789.1 tr|A9T0W7|A9T0W7_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_217831,58.57,2e-19,no description,Nucleotide-binding,
alpha-beta plait; seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
,CUFF.24763.1
         (115 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G00830.4 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   123   2e-29
AT4G00830.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   123   2e-29
AT4G00830.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   123   2e-29
AT4G00830.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   102   5e-23
AT3G52660.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    86   7e-18
AT3G52660.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    86   7e-18

>AT4G00830.4 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr4:352782-354965 FORWARD LENGTH=495
          Length = 495

 Score =  123 bits (309), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 55/75 (73%), Positives = 65/75 (86%)

Query: 39  QAVEGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMPSSSFNLCGNTPTV 98
           + +E VGPGVE+IELIKDP N ++NRGFAFVLYYNNACADYSRQKM  S+F L GN PTV
Sbjct: 214 KVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTV 273

Query: 99  RWADPKNSPDHSASS 113
            WADPK+SP+HSA++
Sbjct: 274 TWADPKSSPEHSAAA 288


>AT4G00830.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr4:352782-354965 FORWARD LENGTH=495
          Length = 495

 Score =  123 bits (309), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 55/75 (73%), Positives = 65/75 (86%)

Query: 39  QAVEGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMPSSSFNLCGNTPTV 98
           + +E VGPGVE+IELIKDP N ++NRGFAFVLYYNNACADYSRQKM  S+F L GN PTV
Sbjct: 214 KVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTV 273

Query: 99  RWADPKNSPDHSASS 113
            WADPK+SP+HSA++
Sbjct: 274 TWADPKSSPEHSAAA 288


>AT4G00830.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr4:352782-354965 FORWARD LENGTH=495
          Length = 495

 Score =  123 bits (309), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 55/75 (73%), Positives = 65/75 (86%)

Query: 39  QAVEGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMPSSSFNLCGNTPTV 98
           + +E VGPGVE+IELIKDP N ++NRGFAFVLYYNNACADYSRQKM  S+F L GN PTV
Sbjct: 214 KVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTV 273

Query: 99  RWADPKNSPDHSASS 113
            WADPK+SP+HSA++
Sbjct: 274 TWADPKSSPEHSAAA 288


>AT4G00830.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr4:352842-354965 FORWARD LENGTH=467
          Length = 467

 Score =  102 bits (254), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 48/75 (64%), Positives = 57/75 (76%), Gaps = 8/75 (10%)

Query: 39  QAVEGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMPSSSFNLCGNTPTV 98
           + +E VGPG        DP N ++NRGFAFVLYYNNACADYSRQKM  S+F L GN PTV
Sbjct: 194 KVIEDVGPG--------DPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTV 245

Query: 99  RWADPKNSPDHSASS 113
            WADPK+SP+HSA++
Sbjct: 246 TWADPKSSPEHSAAA 260


>AT3G52660.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr3:19522598-19524735 FORWARD LENGTH=471
          Length = 471

 Score = 85.5 bits (210), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 49/64 (76%)

Query: 39  QAVEGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMPSSSFNLCGNTPTV 98
           +A   +GPGV+ +EL K+PQN  +NRGFAF+ YYN+ACA+YS+QKM + SF L  N PTV
Sbjct: 190 KAANRIGPGVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMSNPSFKLDDNAPTV 249

Query: 99  RWAD 102
            WA+
Sbjct: 250 SWAE 253


>AT3G52660.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr3:19522598-19524735 FORWARD LENGTH=471
          Length = 471

 Score = 85.5 bits (210), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 49/64 (76%)

Query: 39  QAVEGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMPSSSFNLCGNTPTV 98
           +A   +GPGV+ +EL K+PQN  +NRGFAF+ YYN+ACA+YS+QKM + SF L  N PTV
Sbjct: 190 KAANRIGPGVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMSNPSFKLDDNAPTV 249

Query: 99  RWAD 102
            WA+
Sbjct: 250 SWAE 253