Miyakogusa Predicted Gene

Lj0g3v0359339.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0359339.1 CUFF.24733.1
         (181 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G20050.1 | Symbols: HYD1 | C-8,7 sterol isomerase | chr1:6949...   256   7e-69

>AT1G20050.1 | Symbols: HYD1 | C-8,7 sterol isomerase |
           chr1:6949160-6950135 FORWARD LENGTH=223
          Length = 223

 Score =  256 bits (653), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 123/171 (71%), Positives = 145/171 (84%), Gaps = 5/171 (2%)

Query: 12  KKSKVDRVLMCWWAFTGLTHIILEGYFVFAPEFFKDKTGFYLAEVWKEYSKGDSRYVGRD 71
           KK+K+D++LMCWW FTGLTH+ILEGYFVF+PEFFKD T  YLAEVWKEYSKGDSRYVGRD
Sbjct: 50  KKAKLDKLLMCWWTFTGLTHVILEGYFVFSPEFFKDNTSAYLAEVWKEYSKGDSRYVGRD 109

Query: 72  AGVVTVEGLTAVIEGPASLLAVYAIATGKSYSYMLQFAISLGQLYGTAVYYITAILEGDN 131
           + VV+VEG+TAVI GPASLLA+YAIA  KSYSY+LQ AIS+ QLYG  VY+ITAILEGDN
Sbjct: 110 SAVVSVEGITAVIVGPASLLAIYAIAKEKSYSYVLQLAISVCQLYGCLVYFITAILEGDN 169

Query: 132 FSTNSFYYYAYYIGANFSWIVIPSIIAIRCWRKTS-----AAFRVQGQTKK 177
           F+TNSFYYY+YYIGAN  W++IPS+I+ RCW+K       A   V+ +TKK
Sbjct: 170 FATNSFYYYSYYIGANCWWVLIPSLISFRCWKKICAAAAIANNNVETKTKK 220