Miyakogusa Predicted Gene

Lj0g3v0359189.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0359189.2 Non Chatacterized Hit- tr|I3T8I3|I3T8I3_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.16,0,HLH,Helix-loop-helix domain; HLH, helix-loop-helix
DNA-binding domain,Helix-loop-helix domain; coile,CUFF.24722.2
         (238 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G54680.1 | Symbols: ILR3, bHLH105 | basic helix-loop-helix (b...   306   6e-84
AT1G51070.1 | Symbols: bHLH115 | basic helix-loop-helix (bHLH) D...   268   2e-72
AT1G51070.2 | Symbols: bHLH115 | basic helix-loop-helix (bHLH) D...   244   3e-65
AT3G23210.1 | Symbols: bHLH34 | basic helix-loop-helix (bHLH) DN...   176   2e-44
AT4G14410.1 | Symbols: bHLH104 | basic helix-loop-helix (bHLH) D...   168   3e-42
AT4G14410.2 | Symbols: bHLH104 | basic helix-loop-helix (bHLH) D...   168   3e-42
AT3G19860.2 | Symbols: bHLH121 | basic helix-loop-helix (bHLH) D...    92   5e-19
AT3G19860.1 | Symbols: bHLH121 | basic helix-loop-helix (bHLH) D...    91   5e-19
AT4G36060.2 | Symbols: bHLH11 | basic helix-loop-helix (bHLH) DN...    80   1e-15
AT4G36060.1 | Symbols: bHLH11 | basic helix-loop-helix (bHLH) DN...    79   2e-15
AT3G47640.3 | Symbols: PYE | basic helix-loop-helix (bHLH) DNA-b...    60   1e-09
AT3G47640.2 | Symbols: PYE | basic helix-loop-helix (bHLH) DNA-b...    60   1e-09
AT3G47640.1 | Symbols: PYE | basic helix-loop-helix (bHLH) DNA-b...    60   1e-09

>AT5G54680.1 | Symbols: ILR3, bHLH105 | basic helix-loop-helix
           (bHLH) DNA-binding superfamily protein |
           chr5:22217270-22218993 FORWARD LENGTH=234
          Length = 234

 Score =  306 bits (785), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 164/240 (68%), Positives = 184/240 (76%), Gaps = 8/240 (3%)

Query: 1   MVSRENTNWLFDYGLIDDIPAPEVTFTVPPSGFPWPSSQPLNSSSNVVGVEIDGSLGDSD 60
           MVS EN NW+ D  LID   A   +FT+   GF WP  QP+  SSN     +DGS G+S+
Sbjct: 1   MVSPENANWICD--LID---ADYGSFTIQGPGFSWPVQQPIGVSSNS-SAGVDGSAGNSE 54

Query: 61  SLKEPGSKKRVRSESCSATSSKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILID 120
           + KEPGSKKR R ES SATSSKACREK RRD+LNDKF+ELG+ILEPG PPKTDKAAIL+D
Sbjct: 55  ASKEPGSKKRGRCESSSATSSKACREKQRRDRLNDKFMELGAILEPGNPPKTDKAAILVD 114

Query: 121 AVRMVTQLRGEAQKMKDTNMGLQEKIKELKTEKNELRDEKQRLKTEKERLEQQLKSMNA- 179
           AVRMVTQLRGEAQK+KD+N  LQ+KIKELKTEKNELRDEKQRLKTEKE+LEQQLK+MNA 
Sbjct: 115 AVRMVTQLRGEAQKLKDSNSSLQDKIKELKTEKNELRDEKQRLKTEKEKLEQQLKAMNAP 174

Query: 180 QPSFM-XXXXXXXXXXXXXXXXHGNKLVPFISYPGVAMWQFLPPAARDTSQDHELRPPVA 238
           QPSF                   GNK+VP ISYPGVAMWQF+PPA+ DTSQDH LRPPVA
Sbjct: 175 QPSFFPAPPMMPTAFASAQGQAPGNKMVPIISYPGVAMWQFMPPASVDTSQDHVLRPPVA 234


>AT1G51070.1 | Symbols: bHLH115 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr1:18928018-18929513
           FORWARD LENGTH=226
          Length = 226

 Score =  268 bits (686), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 142/242 (58%), Positives = 167/242 (69%), Gaps = 20/242 (8%)

Query: 1   MVSRENTNWLFDYGLIDDIPAPEVTFTVPPSGFPWPSSQPLNSSSNVVGVEIDGSLGDSD 60
           MVS ENTNWL DY LI      E  F+     FPW         S  V VE+DG L D+D
Sbjct: 1   MVSPENTNWLSDYPLI------EGAFSDQNPTFPWQID-----GSATVSVEVDGFLCDAD 49

Query: 61  SLKEPGSKKRVRSESCSATSSKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILID 120
            +KEP S+KR+++ESC+ ++SKACREK RRD+LNDKF EL S+LEPGR PKTDK AI+ D
Sbjct: 50  VIKEPSSRKRIKTESCTGSNSKACREKQRRDRLNDKFTELSSVLEPGRTPKTDKVAIIND 109

Query: 121 AVRMVTQLRGEAQKMKDTNMGLQEKIKELKTEKNELRDEKQRLKTEKERLEQQLKSMNA- 179
           A+RMV Q R EAQK+KD N  LQEKIKELK EKNELRDEKQ+LK EKER++QQLK++   
Sbjct: 110 AIRMVNQARDEAQKLKDLNSSLQEKIKELKDEKNELRDEKQKLKVEKERIDQQLKAIKTQ 169

Query: 180 ---QPSFMXXXXXXXXXXXXXXXXHGNKLVPFISYPGVAMWQFLPPAARDTSQDHELRPP 236
              QP F+                 G+KLVPF +YPG AMWQF+PPAA DTSQDH LRPP
Sbjct: 170 PQPQPCFLPNPQTLSQAQAP-----GSKLVPFTTYPGFAMWQFMPPAAVDTSQDHVLRPP 224

Query: 237 VA 238
           VA
Sbjct: 225 VA 226


>AT1G51070.2 | Symbols: bHLH115 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr1:18928018-18929513
           FORWARD LENGTH=292
          Length = 292

 Score =  244 bits (624), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 122/194 (62%), Positives = 146/194 (75%), Gaps = 9/194 (4%)

Query: 49  GVEIDGSLGDSDSLKEPGSKKRVRSESCSATSSKACREKLRRDKLNDKFVELGSILEPGR 108
            VE+DG L D+D +KEP S+KR+++ESC+ ++SKACREK RRD+LNDKF EL S+LEPGR
Sbjct: 104 SVEVDGFLCDADVIKEPSSRKRIKTESCTGSNSKACREKQRRDRLNDKFTELSSVLEPGR 163

Query: 109 PPKTDKAAILIDAVRMVTQLRGEAQKMKDTNMGLQEKIKELKTEKNELRDEKQRLKTEKE 168
            PKTDK AI+ DA+RMV Q R EAQK+KD N  LQEKIKELK EKNELRDEKQ+LK EKE
Sbjct: 164 TPKTDKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKIKELKDEKNELRDEKQKLKVEKE 223

Query: 169 RLEQQLKSMNA----QPSFMXXXXXXXXXXXXXXXXHGNKLVPFISYPGVAMWQFLPPAA 224
           R++QQLK++      QP F+                 G+KLVPF +YPG AMWQF+PPAA
Sbjct: 224 RIDQQLKAIKTQPQPQPCFLPNPQTLSQAQAP-----GSKLVPFTTYPGFAMWQFMPPAA 278

Query: 225 RDTSQDHELRPPVA 238
            DTSQDH LRPPVA
Sbjct: 279 VDTSQDHVLRPPVA 292


>AT3G23210.1 | Symbols: bHLH34 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr3:8283255-8284915
           REVERSE LENGTH=320
          Length = 320

 Score =  176 bits (445), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 104/203 (51%), Positives = 133/203 (65%), Gaps = 21/203 (10%)

Query: 41  LNSSSNVVGVEIDGSLGDSDSLKEPGSKKRVRSESCSATSSKACREKLRRDKLNDKFVEL 100
           +NSSS+V  V+        +  +E  S KR R+ SCS   +KACREKLRR+KLNDKF++L
Sbjct: 134 INSSSSVGAVK--------EEFEEECSGKRRRTGSCSKPGTKACREKLRREKLNDKFMDL 185

Query: 101 GSILEPGRPPKTDKAAILIDAVRMVTQLRGEAQKMKDTNMGLQEKIKELKTEKNELRDEK 160
            S+LEPGR PKTDK+AIL DA+R+V QLRGEA ++++TN  L E+IK LK +KNELR+EK
Sbjct: 186 SSVLEPGRTPKTDKSAILDDAIRVVNQLRGEAHELQETNQKLLEEIKSLKADKNELREEK 245

Query: 161 QRLKTEKERLEQQLKSMNA-QPSFMXXXXXXXXXXXXXXXXHGNKLV---PFISY-PGVA 215
             LK EKE++EQQLKSM    P FM                H +K+    P+  Y P + 
Sbjct: 246 LVLKAEKEKMEQQLKSMVVPSPGFM--------PSQHPAAFHSHKMAVAYPYGYYPPNMP 297

Query: 216 MWQFLPPAARDTSQDHELRPPVA 238
           MW  LPPA RDTS+D +  PPVA
Sbjct: 298 MWSPLPPADRDTSRDLKNLPPVA 320


>AT4G14410.1 | Symbols: bHLH104 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr4:8300077-8301503
           FORWARD LENGTH=283
          Length = 283

 Score =  168 bits (426), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 91/182 (50%), Positives = 122/182 (67%), Gaps = 9/182 (4%)

Query: 58  DSDSLKEPGSKKRVRSESCS-ATSSKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAA 116
           + + L +  S+KR R+ SCS    +KACRE+LRR+KLN++F++L S+LEPGR PKTDK A
Sbjct: 110 EQEHLDDDCSRKRARTGSCSRGGGTKACRERLRREKLNERFMDLSSVLEPGRTPKTDKPA 169

Query: 117 ILIDAVRMVTQLRGEAQKMKDTNMGLQEKIKELKTEKNELRDEKQRLKTEKERLEQQLKS 176
           IL DA+R++ QLR EA K+++TN  L E+IK LK EKNELR+EK  LK +KE+ EQQLKS
Sbjct: 170 ILDDAIRILNQLRDEALKLEETNQKLLEEIKSLKAEKNELREEKLVLKADKEKTEQQLKS 229

Query: 177 MNAQPSFMXXXXXXXXXXXXXXXXHGNKLVPFISYPGVAMWQFLPPAARDTSQDHELRPP 236
           M A  S                  + NK+  + SY  + MW ++P + RDTS+D ELRPP
Sbjct: 230 MTAPSSGF--------IPHIPAAFNHNKMAVYPSYGYMPMWHYMPQSVRDTSRDQELRPP 281

Query: 237 VA 238
            A
Sbjct: 282 AA 283


>AT4G14410.2 | Symbols: bHLH104 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr4:8300418-8301503
           FORWARD LENGTH=277
          Length = 277

 Score =  168 bits (426), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 91/182 (50%), Positives = 122/182 (67%), Gaps = 9/182 (4%)

Query: 58  DSDSLKEPGSKKRVRSESCS-ATSSKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAA 116
           + + L +  S+KR R+ SCS    +KACRE+LRR+KLN++F++L S+LEPGR PKTDK A
Sbjct: 104 EQEHLDDDCSRKRARTGSCSRGGGTKACRERLRREKLNERFMDLSSVLEPGRTPKTDKPA 163

Query: 117 ILIDAVRMVTQLRGEAQKMKDTNMGLQEKIKELKTEKNELRDEKQRLKTEKERLEQQLKS 176
           IL DA+R++ QLR EA K+++TN  L E+IK LK EKNELR+EK  LK +KE+ EQQLKS
Sbjct: 164 ILDDAIRILNQLRDEALKLEETNQKLLEEIKSLKAEKNELREEKLVLKADKEKTEQQLKS 223

Query: 177 MNAQPSFMXXXXXXXXXXXXXXXXHGNKLVPFISYPGVAMWQFLPPAARDTSQDHELRPP 236
           M A  S                  + NK+  + SY  + MW ++P + RDTS+D ELRPP
Sbjct: 224 MTAPSSGF--------IPHIPAAFNHNKMAVYPSYGYMPMWHYMPQSVRDTSRDQELRPP 275

Query: 237 VA 238
            A
Sbjct: 276 AA 277


>AT3G19860.2 | Symbols: bHLH121 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr3:6903842-6905863
           FORWARD LENGTH=337
          Length = 337

 Score = 91.7 bits (226), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 51/103 (49%), Positives = 72/103 (69%), Gaps = 5/103 (4%)

Query: 80  SSKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRGEAQKMKDTN 139
           S KA REKLRR+KLN+ FVELG++L+P RP K DKA IL D V+++ +L  E  K+K   
Sbjct: 61  SQKAGREKLRREKLNEHFVELGNVLDPERP-KNDKATILTDTVQLLKELTSEVNKLKSEY 119

Query: 140 MGLQEKIKELKTEKNELRDEKQRLKTEKERL----EQQLKSMN 178
             L ++ +EL  EKN+LR+EK  LK++ E L    +Q+L+SM+
Sbjct: 120 TALTDESRELTQEKNDLREEKTSLKSDIENLNLQYQQRLRSMS 162


>AT3G19860.1 | Symbols: bHLH121 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr3:6904579-6905863
           FORWARD LENGTH=284
          Length = 284

 Score = 91.3 bits (225), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 51/103 (49%), Positives = 72/103 (69%), Gaps = 5/103 (4%)

Query: 80  SSKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRGEAQKMKDTN 139
           S KA REKLRR+KLN+ FVELG++L+P RP K DKA IL D V+++ +L  E  K+K   
Sbjct: 8   SQKAGREKLRREKLNEHFVELGNVLDPERP-KNDKATILTDTVQLLKELTSEVNKLKSEY 66

Query: 140 MGLQEKIKELKTEKNELRDEKQRLKTEKERL----EQQLKSMN 178
             L ++ +EL  EKN+LR+EK  LK++ E L    +Q+L+SM+
Sbjct: 67  TALTDESRELTQEKNDLREEKTSLKSDIENLNLQYQQRLRSMS 109


>AT4G36060.2 | Symbols: bHLH11 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr4:17055521-17056567
           FORWARD LENGTH=268
          Length = 268

 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 72/110 (65%), Gaps = 1/110 (0%)

Query: 66  GSKKRVRSESCSATSSKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILIDAVRMV 125
           G++  V  +  +  S KA REKLRRDKL ++F+ELG+ L+P RP K+DKA++L D ++M+
Sbjct: 15  GAEMVVEVKKEAVCSQKAEREKLRRDKLKEQFLELGNALDPNRP-KSDKASVLTDTIQML 73

Query: 126 TQLRGEAQKMKDTNMGLQEKIKELKTEKNELRDEKQRLKTEKERLEQQLK 175
             +  +  ++K     L ++ +EL  EK+ELR+EK  LK++ E L  Q +
Sbjct: 74  KDVMNQVDRLKAEYETLSQESRELIQEKSELREEKATLKSDIEILNAQYQ 123


>AT4G36060.1 | Symbols: bHLH11 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr4:17055397-17056567
           FORWARD LENGTH=286
          Length = 286

 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 72/110 (65%), Gaps = 1/110 (0%)

Query: 66  GSKKRVRSESCSATSSKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILIDAVRMV 125
           G++  V  +  +  S KA REKLRRDKL ++F+ELG+ L+P RP K+DKA++L D ++M+
Sbjct: 33  GAEMVVEVKKEAVCSQKAEREKLRRDKLKEQFLELGNALDPNRP-KSDKASVLTDTIQML 91

Query: 126 TQLRGEAQKMKDTNMGLQEKIKELKTEKNELRDEKQRLKTEKERLEQQLK 175
             +  +  ++K     L ++ +EL  EK+ELR+EK  LK++ E L  Q +
Sbjct: 92  KDVMNQVDRLKAEYETLSQESRELIQEKSELREEKATLKSDIEILNAQYQ 141


>AT3G47640.3 | Symbols: PYE | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr3:17568035-17569101
           FORWARD LENGTH=240
          Length = 240

 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 61/100 (61%), Gaps = 1/100 (1%)

Query: 81  SKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRGEAQKMKDTNM 140
           +KA RE+L+R+ LN+ F+EL   LE  +   + KA+IL +A R +  + G+ + ++  + 
Sbjct: 31  NKAVRERLKREHLNELFIELADTLELNQQ-NSGKASILCEATRFLKDVFGQIESLRKEHA 89

Query: 141 GLQEKIKELKTEKNELRDEKQRLKTEKERLEQQLKSMNAQ 180
            L  +   + TEKNEL++E   L+TE  +L+ ++++   Q
Sbjct: 90  SLLSESSYVTTEKNELKEETSVLETEISKLQNEIEARANQ 129


>AT3G47640.2 | Symbols: PYE | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr3:17568035-17569101
           FORWARD LENGTH=240
          Length = 240

 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 61/100 (61%), Gaps = 1/100 (1%)

Query: 81  SKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRGEAQKMKDTNM 140
           +KA RE+L+R+ LN+ F+EL   LE  +   + KA+IL +A R +  + G+ + ++  + 
Sbjct: 31  NKAVRERLKREHLNELFIELADTLELNQQ-NSGKASILCEATRFLKDVFGQIESLRKEHA 89

Query: 141 GLQEKIKELKTEKNELRDEKQRLKTEKERLEQQLKSMNAQ 180
            L  +   + TEKNEL++E   L+TE  +L+ ++++   Q
Sbjct: 90  SLLSESSYVTTEKNELKEETSVLETEISKLQNEIEARANQ 129


>AT3G47640.1 | Symbols: PYE | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr3:17568035-17569101
           FORWARD LENGTH=240
          Length = 240

 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 61/100 (61%), Gaps = 1/100 (1%)

Query: 81  SKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRGEAQKMKDTNM 140
           +KA RE+L+R+ LN+ F+EL   LE  +   + KA+IL +A R +  + G+ + ++  + 
Sbjct: 31  NKAVRERLKREHLNELFIELADTLELNQQ-NSGKASILCEATRFLKDVFGQIESLRKEHA 89

Query: 141 GLQEKIKELKTEKNELRDEKQRLKTEKERLEQQLKSMNAQ 180
            L  +   + TEKNEL++E   L+TE  +L+ ++++   Q
Sbjct: 90  SLLSESSYVTTEKNELKEETSVLETEISKLQNEIEARANQ 129