Miyakogusa Predicted Gene

Lj0g3v0359119.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0359119.1 tr|D4HTS9|D4HTS9_9MAGN ARF4 protein OS=Cabomba
aquatica GN=ARF4 PE=2 SV=1,27.71,2e-16, ,CUFF.24706.1
         (321 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G60450.1 | Symbols: ARF4 | auxin response factor 4 | chr5:243...   144   9e-35
AT2G33860.1 | Symbols: ETT, ARF3 | Transcriptional factor B3 fam...    64   2e-10

>AT5G60450.1 | Symbols: ARF4 | auxin response factor 4 |
           chr5:24308558-24312187 REVERSE LENGTH=788
          Length = 788

 Score =  144 bits (363), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 113/310 (36%), Positives = 148/310 (47%), Gaps = 35/310 (11%)

Query: 15  VRWDENIDANHQDRVSPWDIDPSGHLPPMNIQSSPRLKKLRTGLQVASPSQLVTASGSGM 74
           VRWDE+  ++HQ+RVSPW+IDPS  LP ++IQSSPR K+   GL   +P         G 
Sbjct: 385 VRWDESFVSDHQERVSPWEIDPSVSLPHLSIQSSPRPKRPWAGLLDTTPPGNPITKRGGF 444

Query: 75  MGFEESVRSPKVLQGQENAGFVSLYYGCDTLTNRRGFEMNSPSHQN--LASAGVGKVTST 132
           + FEESVR  KVLQGQEN G  S   G D + NRR  +    SH N  L S+ V      
Sbjct: 445 LDFEESVRPSKVLQGQENIGSASPSQGFDVM-NRRILDFAMQSHANPVLVSSRVKDRFGE 503

Query: 133 ELMSVHPFSYAAGFMETNSFPRVLQGQEICPMKSLTGKVDLSLGAWGKPNGSCTTFNLHQ 192
            + +       +G M+ + FPRVLQGQEIC +KS       S  A   P         +Q
Sbjct: 504 FVDATGVNPACSGVMDLDRFPRVLQGQEICSLKSFPQFAGFSPAAAPNPFA-------YQ 556

Query: 193 ATNPSF--------PSAYFPYGDIHNVGHASMFGSKPPTFQRENVSFNTPFSQAGIIRNE 244
           A   S+         S + PY + +N G+ S   S PP             S+A     E
Sbjct: 557 ANKSSYYPLALHGIRSTHVPYQNPYNAGNQS---SGPP-------------SRAINFGEE 600

Query: 245 VGRSDLPNEHKLQDNISVSASLGGADMRILDDNNVKANVNS-CKLFGFPLSGETSPQNLQ 303
             + D  NE  L +N++         M     + +  N +S CKLFGF L  ET     Q
Sbjct: 601 TRKFDAQNEGGLPNNVTADLPFKIDMMGKQKGSELNMNASSGCKLFGFSLPVETPASKPQ 660

Query: 304 NPAKRSCTKV 313
           + +KR CTKV
Sbjct: 661 SSSKRICTKV 670


>AT2G33860.1 | Symbols: ETT, ARF3 | Transcriptional factor B3 family
           protein / auxin-responsive factor AUX/IAA-related |
           chr2:14325444-14328613 REVERSE LENGTH=608
          Length = 608

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 68/155 (43%), Gaps = 32/155 (20%)

Query: 15  VRWDENIDANHQDRVSPWDIDPSGHLPPMNIQSSPRLKKLRTGLQVASPSQLVTASGSGM 74
           VRWD+ +   HQ RVSPW+I+PSG +       +   K+ R G     P  +  + G   
Sbjct: 368 VRWDDIVANGHQQRVSPWEIEPSGSISNSGSFVTTGPKRSRIGFSSGKP-DIPVSEGIRA 426

Query: 75  MGFEESVRSPKVLQGQE-NAGFVSLYYGCDTLTNRRGFEMNSPSHQNLASAGVGKVTSTE 133
             FEES+R  +VLQGQE   GF++    C                   A A  G+   TE
Sbjct: 427 TDFEESLRFQRVLQGQEIFPGFINT---CS---------------DGGAGARRGRFKGTE 468

Query: 134 LMSVHPFSYAAGFMETNSFPRVLQGQEICPMKSLT 168
                       F ++  F +VLQGQE  P  S+T
Sbjct: 469 ------------FGDSYGFHKVLQGQETVPAYSIT 491