Miyakogusa Predicted Gene

Lj0g3v0359049.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0359049.1 tr|G7K6Y7|G7K6Y7_MEDTR Microtubule-associated
protein TORTIFOLIA1 OS=Medicago truncatula
GN=MTR_5g03,70.15,0,seg,NULL; HEAT,HEAT; ARM repeat,Armadillo-type
fold; no description,Armadillo-like helical; FAMILY N,CUFF.24700.1
         (660 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G27210.1 | Symbols:  | ARM repeat superfamily protein | chr1:...   411   e-115
AT5G62580.1 | Symbols:  | ARM repeat superfamily protein | chr5:...   302   4e-82
AT1G59850.1 | Symbols:  | ARM repeat superfamily protein | chr1:...   233   2e-61
AT2G07170.1 | Symbols:  | ARM repeat superfamily protein | chr2:...   157   2e-38
AT4G27060.1 | Symbols: TOR1, SPR2, CN | ARM repeat superfamily p...   135   8e-32
AT1G50890.1 | Symbols:  | ARM repeat superfamily protein | chr1:...   115   1e-25

>AT1G27210.1 | Symbols:  | ARM repeat superfamily protein |
           chr1:9455669-9457917 REVERSE LENGTH=625
          Length = 625

 Score =  411 bits (1056), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 272/610 (44%), Positives = 351/610 (57%), Gaps = 76/610 (12%)

Query: 22  ELRQRVIACLNKLSDRDTLACATAELESIARTLTHDSFSSFLSCIHNTDSSSKSPVRKQC 81
           +L+QRVIACLNKL+DRDTLA A+AEL+SIAR LTHDSFS FL+CIHNTDSS KSPVRKQC
Sbjct: 34  DLKQRVIACLNKLADRDTLALASAELDSIARNLTHDSFSPFLNCIHNTDSSVKSPVRKQC 93

Query: 82  VHLLTLLSRFHGDALSPFLSKMISTVLLRLRDTDSAVRSACVDAVSAMSSRITRPSFSVS 141
           V LL++LSR+HGD+L+P L+KM+STV+ RLRD DS+VRSAC  A + MS+ +TR  F+ S
Sbjct: 94  VALLSVLSRYHGDSLTPHLAKMVSTVIRRLRDPDSSVRSACAVATADMSAHVTRQPFA-S 152

Query: 142 FLKPFMDALAQEQDGNSQIGXXXXXXXXXXXXXXXXXXSLRRSALPRLGKLLKKDTCKAR 201
             KP ++ L QE D N QIG                   LR+S LP++GKLLK D  KA+
Sbjct: 153 VAKPLIETLIQEGDSNLQIGAALCLAASVDAATDPESEQLRKS-LPKIGKLLKSDGFKAK 211

Query: 202 AALLVLVGSV-------------------VEFLSSEDWTVRKASAEALGKVASVEKGLAS 242
           AALL  VGS+                   +EFLSSEDW  RK++AEALGKVA+ E  LAS
Sbjct: 212 AALLSAVGSIITAGGAGTKPVLDWLVPVLIEFLSSEDWAARKSAAEALGKVATAED-LAS 270

Query: 243 QHKVLCVDSLQNRRFDKVKVVRETMNLTLEMWKEVTNVSEDVPAPVKSACASVEDGKGQC 302
           Q+K  C  +L++RRFDKVK VRETMN  L +WKEV+   E   +P +S   S +DG   C
Sbjct: 271 QYKKTCTTALESRRFDKVKSVRETMNRALNLWKEVSTDDEASLSPSRS---STDDGNIGC 327

Query: 303 ---VAKSSPC-IGPKSSQSKKTVP-SSRSP--PSTASFVSSIKREGALKSNNKDLRVRAM 355
              V +SS   +G KS++ KK  P   RSP  P   S+ ++ ++E   K N  ++    M
Sbjct: 328 FSSVTRSSTIDVGLKSARPKKVTPIMKRSPSLPVNRSYAATRQKENLPKRNQGNM---TM 384

Query: 356 HQQNHSEISDEKLDTPVLKLPPSNISFDDIKRCDFEASKPAPYQNGVNSRVDIKRVLFSK 415
             +  S + +        K P     F  +K+   E  + A      +   DI +   S+
Sbjct: 385 LVEEASSVDN--------KGP----HFTPVKKSSEETEEKAN-----SGGPDIIKHTISE 427

Query: 416 MS--DEKVRKFGG--SKPRVVPCYXXXXXXXXVRVSNVSEACESSQDVEDLSLIREQLIX 471
            S  D KV  FGG  S  RV PC          +     +  ES +D E+LSLIREQL  
Sbjct: 428 KSREDSKVSSFGGLRSGSRVAPCSDDGDSVKNCK----DDVEESKKDSEELSLIREQLAL 483

Query: 472 XXXXXXXXXXXXXRFIGSSQTGMNSLETRVYGLEMALDEISHDLALSSGRIP--NTDAIE 529
                        +F+G+SQ+G+ SLE+RV GLEMALDEIS DLA+S+GR+P  ++    
Sbjct: 484 IENQQSSLLDLLQKFMGTSQSGIQSLESRVSGLEMALDEISCDLAVSNGRVPRNSSGCAG 543

Query: 530 DTCCKLPGTDFLSSKFWKRNEGRYSTSRRFSLGSSASPTAVHNATDGNGSREVLTANNKK 589
           D+C KLPGT+FLS KFW++ E R               TA   A    G RE    NN +
Sbjct: 544 DSCSKLPGTEFLSPKFWRKTEERPRNRN----------TANEMAAYDQGMRESTDTNNGQ 593

Query: 590 NQHRRGGGGF 599
               RGG  F
Sbjct: 594 ----RGGSVF 599


>AT5G62580.1 | Symbols:  | ARM repeat superfamily protein |
           chr5:25120010-25122259 FORWARD LENGTH=615
          Length = 615

 Score =  302 bits (774), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 216/629 (34%), Positives = 327/629 (51%), Gaps = 80/629 (12%)

Query: 19  STQELRQRVIACLNKLSDRDTLACATAELESIARTLTHDSFS----SFLSCIHNTDSSSK 74
           +T+  +Q +   L KL DRDT   A  EL+ +AR +   S S    SF+S I + D+  K
Sbjct: 2   ATKNSKQNMSVLLTKLGDRDTFTMAARELDLMARQIDPSSSSGNLQSFISVILSVDTGDK 61

Query: 75  SPVRKQCVHLLTLLS-RFHGDALSPFLSKMISTVLLRLRDTDSAVRSACVDAVSAMSSRI 133
             VRK C+HLL +LS     ++LSPFLSK+++ +  RLRD DS++RS CV AVSA+SSR 
Sbjct: 62  PAVRKHCIHLLAVLSVSLPLNSLSPFLSKILTRITRRLRDPDSSIRSTCVAAVSAISSRT 121

Query: 134 TRPSFSVSFLKPFMDALAQEQDGNSQIGXXXXXXXXXXXXXXXXXXSLRRSALPRLGKLL 193
           T+P F  +F+KP  D L  EQ+ N+QIG                   L ++ LPRL KL+
Sbjct: 122 TKPPFYSAFMKPLADTLFTEQEVNAQIGAALCLAAAIDSASDPDPVRLGQTLLPRLEKLV 181

Query: 194 KKDTCKARAALLVLVGSVV-----------------------EFLSSEDWTVRKASAEAL 230
           K +  KA++A +V++GSV+                        FL SEDW  RKA+AEAL
Sbjct: 182 KCNAFKAKSAGVVVIGSVIGAGGLSGTSVSSGGLKGLVDCLLSFLVSEDWAARKAAAEAL 241

Query: 231 GKVASVEKGLASQHKVLCVDSLQNRRFDKVKVVRETMNLTLEMWKEVTNVSEDVPAPVKS 290
           G++A++E+    + K  C+   ++R++DKVK VRE MN  +E WK+V ++SE+V  P  +
Sbjct: 242 GRLATMERNELGEFKAKCLKIFESRKYDKVKAVREVMNQMMEAWKQVPDLSEEVSPPRSN 301

Query: 291 ACASVEDGKGQCVAKSSPCIGPKSSQSKKTVPSSRSPPSTASFVSSIKREGALKS--NNK 348
           A +  +   G+  + S   +G   ++S+  + +  +PP + S  ++ +++   KS    K
Sbjct: 302 ASSKGDASDGRYPSGSR--VGSTPAKSRTHLVNRSTPPGS-SLATTARKQANRKSIDQKK 358

Query: 349 DLRVRAMHQQNHSEISDEKLDTPVLKLPPSNISFDDIKRCDFEASKPAPYQNGVNSRVDI 408
                ++ + N     + K     +   P+ +S +D + CD +       +N   +    
Sbjct: 359 TSLTASLTKPNVRRRLEWKAGGASI---PTGVSLEDEQHCDHD-------ENAKET---- 404

Query: 409 KRVLFSKMSDEKVRKFGGS----KPRVVPCYXXXXXXXXVRVSNV-SEACESSQDVEDLS 463
                S  S   V+K GG        + P          V   N  S  C+    +ED+S
Sbjct: 405 -----SHSSHNTVQKLGGVSSSLNGNIPPSGATMVTGHHVLSENPNSNNCKG---LEDIS 456

Query: 464 LIREQLIXXXXXXXXXXXXXXRFIGSSQTGMNSLETRVYGLEMALDEISHDLALSSGRIP 523
           LIR QL+              RF+GSSQ GM  LETRV+GLE+ALDEIS+DLA+S+GR+ 
Sbjct: 457 LIRNQLVQIEQQQANLMDLLQRFVGSSQHGMRGLETRVHGLELALDEISYDLAVSNGRMS 516

Query: 524 NTDAIEDTCCKLPGTDFLSSKFWKRNEGRYSTSRRFSL-GSSASPTAVHNATDGNGSREV 582
           N  +  + CC LP   F+ SKFWK+++ +YS SR  +    +A  T + N+         
Sbjct: 517 NGSS-RNNCCLLPSGSFIKSKFWKKHDSKYSASRMSTYRNRNAETTEIQNS--------- 566

Query: 583 LTANNKKNQHR-RGGGGFLVNPLAEVQSD 610
                   +HR  G  GF+VNPLAE++ D
Sbjct: 567 --------RHRFNGSPGFIVNPLAEIRPD 587


>AT1G59850.1 | Symbols:  | ARM repeat superfamily protein |
           chr1:22028509-22030207 REVERSE LENGTH=498
          Length = 498

 Score =  233 bits (595), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 137/277 (49%), Positives = 186/277 (67%), Gaps = 23/277 (8%)

Query: 22  ELRQRVIACLNKLSDRDTLACATAELESIARTLTHDSFSSFLSCIHNTDSSSKSPVRKQC 81
           +L+QRVIACLN+LSDRDTLA A AEL+SIA  L+ ++FS F++C+ +TDSS+KSPVRK C
Sbjct: 21  DLKQRVIACLNRLSDRDTLALAAAELDSIALNLSPETFSLFINCLQSTDSSAKSPVRKHC 80

Query: 82  VHLLTLLSRFHGDALSPFLSKMISTVLLRLRDTDSAVRSACVDAVSAMSSRITRPSFSVS 141
           V LL++LSR HGD+L+P LSKM+STVL RLRD DS+VR+ACV A   M++ IT   FS+ 
Sbjct: 81  VSLLSVLSRSHGDSLAPHLSKMVSTVLRRLRDPDSSVRAACVAASVDMTTNITGQPFSIL 140

Query: 142 FLKPFMDALAQEQDGNSQIGXXXXXXXXXXXXXXXXXXSLRRSALPRLGKLLKKDTCKAR 201
           F  P ++ +  + D N+QI                    L++ ALP++GKLLK +  KA+
Sbjct: 141 F-GPMIETVIHDCDPNAQISAAMCLAAAVDAADEPDVEQLQK-ALPKIGKLLKSEGFKAK 198

Query: 202 AALLVLVGSVV---------------------EFLSSEDWTVRKASAEALGKVASVEKGL 240
           A LL  +G+V+                     EFLSS+DW  RKA+AEA+ +VA VE+ L
Sbjct: 199 AELLGAIGTVIGAVGGRNSEKAVLDWLLPNVSEFLSSDDWRARKAAAEAMARVAMVEEEL 258

Query: 241 ASQHKVLCVDSLQNRRFDKVKVVRETMNLTLEMWKEV 277
           A  +K  C+  L++RRFDKVK+VRETMN TL +WK++
Sbjct: 259 APLYKKTCLGILESRRFDKVKLVRETMNRTLGLWKQL 295



 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 59/125 (47%), Gaps = 6/125 (4%)

Query: 409 KRVLF-SKMSDEKVRKFGGSKPRVVPCYXXXXXXXXVRVSNVSEACESSQDVEDLSLIRE 467
           KRVLF +KM   KV++ G +K +VV              S+ S+A     + E+LSLIR 
Sbjct: 376 KRVLFPAKM--HKVKENGSNKSQVVQSSDEESPKTDSGSSSSSQA---KSNAEELSLIRH 430

Query: 468 QLIXXXXXXXXXXXXXXRFIGSSQTGMNSLETRVYGLEMALDEISHDLALSSGRIPNTDA 527
           Q+               +F+ SS  GM SLE RV GLE +   IS DL +S     N + 
Sbjct: 431 QITQIEKQQSSLLDLFQKFMESSHNGMQSLERRVRGLETSFSVISTDLLVSRSITQNGNH 490

Query: 528 IEDTC 532
             + C
Sbjct: 491 KRNAC 495


>AT2G07170.1 | Symbols:  | ARM repeat superfamily protein |
           chr2:2975565-2978692 FORWARD LENGTH=820
          Length = 820

 Score =  157 bits (398), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/342 (31%), Positives = 173/342 (50%), Gaps = 36/342 (10%)

Query: 22  ELRQRVIACLNKLSDRDTLACATAELESIARTLTHDSFSSFLSCIHNTDSSSKSPVRKQC 81
           EL+++V+  LNKL+DRDT      ELE     L  D  S FLSCI +TDS  KS VRK+C
Sbjct: 26  ELKKKVVIALNKLADRDTYQRGVDELEKTVEHLAPDKVSCFLSCILDTDSEQKSAVRKEC 85

Query: 82  VHLLTLLSRFHGDALSPFLSKMISTVLLRLRDTDSAVRSACVDAVSAMSSRIT---RPSF 138
           + L+  L+RFH   + P+L KM+S+++ RL+D DS VR AC++ +  ++S+++     +F
Sbjct: 86  IRLMGTLARFHEGLVGPYLGKMVSSIVKRLKDPDSVVRDACIETMGVLASKMSCYEDQNF 145

Query: 139 S--VSFLKPFMDALAQEQDGNSQIGXXXXXXXXXXXXXXXXXXSLRRSALPRLGKLLKKD 196
              VS +KP  +A+  +Q+   Q G                   ++R  L R  KLL   
Sbjct: 146 GVFVSLVKPLFEAIG-DQNKYVQSGAALCLARVIDSSPEAPVAIIQR-MLMRTVKLLNNS 203

Query: 197 TCKARAALLVLVGSVV-------------------EFLSSEDWTVRKASAEALGKVASVE 237
              A+ A++ L  S++                   + L ++DWT RKA++ AL ++A+  
Sbjct: 204 HFIAKPAVIELNRSIILAGGATSKSVLSSAMSSFQDALKNKDWTTRKAASVALMEIAATG 263

Query: 238 KGLASQHKVLCVDSLQNRRFDKVKVVRETMNLTLEMWKEVTNVSEDVPAPVKSACASVED 297
           +      K  C+ SL++ RFDKVK VR+++ L L+ WK V       P+  +S+     +
Sbjct: 264 EKFLGPLKASCICSLESCRFDKVKPVRDSVILALKYWKGVPGSDSPEPSETESSVKESYN 323

Query: 298 GKGQCV---------AKSSPCIGPKSSQSKKTVP-SSRSPPS 329
           G  +            K    I   +  ++K VP S+R PP+
Sbjct: 324 GARESSELFSTSDFKVKDGMSIKYVTDVTRKKVPVSARQPPT 365


>AT4G27060.1 | Symbols: TOR1, SPR2, CN | ARM repeat superfamily
           protein | chr4:13581581-13585070 REVERSE LENGTH=864
          Length = 864

 Score =  135 bits (341), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 151/286 (52%), Gaps = 31/286 (10%)

Query: 22  ELRQRVIACLNKLSDRDTLACATAELESIARTLTHDSFSSFLSCIHNTDSSSKSPVRKQC 81
           EL+Q+++  ++KL+DRDT   A  +LE   ++LT ++   FL+C++++ S  K  V+K+C
Sbjct: 41  ELKQKILTSISKLADRDTYQIAVEDLEKTIQSLTPETLPMFLNCLYDSCSDPKPAVKKEC 100

Query: 82  VHLLTLLSRFHGDALSPFLSKMISTVLLRLRDTDSAVRSACVDAVSAMSSRITR------ 135
           +HLL+ +   H D+ +  L+K+I+ ++ RL+D+DS VR AC D + A+S    +      
Sbjct: 101 LHLLSYVCSLHCDSTAAHLTKIIAQIVKRLKDSDSGVRDACRDTIGALSGIYLKGKEEGT 160

Query: 136 ----PSFSVS-FLKPFMDALAQEQDGNSQIGXXXXXXXXXXXXXXXXXXSLRRSALPRLG 190
                S +V  F+KP  +A+  EQ+   Q G                  S ++   PR+ 
Sbjct: 161 NTGSASLAVGLFVKPLFEAMG-EQNKVVQSGASMCMARMVESAASPPVTSFQK-LCPRIC 218

Query: 191 KLLKKDTCKARAALLVLVGSVVEF------------------LSSEDWTVRKASAEALGK 232
           KLL   +  A+A+LL +V S+ +                   L S DW  RKA+AE L  
Sbjct: 219 KLLSNSSFLAKASLLPVVSSLSQVGAIAPQSLESLLESIHDCLGSTDWVTRKAAAETLTA 278

Query: 233 VASVEKGLASQHKVLCVDSLQNRRFDKVKVVRETMNLTLEMWKEVT 278
           +AS   GL  +     +  L+  RFDK+K VRE++   L++WK+++
Sbjct: 279 LASHSSGLIKEKTDSTITVLETCRFDKIKPVRESVTEALQLWKKIS 324


>AT1G50890.1 | Symbols:  | ARM repeat superfamily protein |
           chr1:18862295-18865752 REVERSE LENGTH=821
          Length = 821

 Score =  115 bits (288), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 141/292 (48%), Gaps = 33/292 (11%)

Query: 22  ELRQRVIACLNKLSDRDTLACATAELESIARTL--THDSFSSFLSCIHNTDSSSKSPVRK 79
           EL+QR++  L++L DRDT   A  +LE I  ++  + +     L C+ ++ S  K+PV++
Sbjct: 36  ELKQRILTSLSRLGDRDTYQIAVDDLEKIVVSVPDSPEILPVLLHCLFDSSSDLKAPVKR 95

Query: 80  QCVHLLTLLSRFHGDALSPFLSKMISTVLLRLRDTDSAVRSACVDAVSAMSSRITRP--- 136
           + + LL+ L   + D     L+K+IS ++ RL+D D+ VR AC DA+ ++S++  +    
Sbjct: 96  ESIRLLSFLCLSYTDLSFSQLAKIISHIVKRLKDADNGVRDACRDAIGSLSAQFLKEKEV 155

Query: 137 --------SFSVSFLKPFMDALAQEQDGNSQIGXXXXXXXXXXXXXXXXXXSLRRSALPR 188
                   S    F KP  +A+A EQ+ + Q G                  + ++   PR
Sbjct: 156 ENGNYVGSSLVGLFAKPLFEAMA-EQNKSLQSGAAICMGKMIDSATEPPVAAFQK-LCPR 213

Query: 189 LGKLLKKDTCKARAALLVLVG------------------SVVEFLSSEDWTVRKASAEAL 230
           + KLL       +A+LL +VG                  S+ E L   +W  RKA+A+ L
Sbjct: 214 ISKLLNSPNYITKASLLPVVGSLSQVGAIAPQSLESLLHSIHECLGCTNWVTRKAAADVL 273

Query: 231 GKVASVEKGLASQHKVLCVDSLQNRRFDKVKVVRETMNLTLEMWKEVTNVSE 282
             +A     L +      + +L+  RFDK+K VRE+++  L +WK +    E
Sbjct: 274 ISLAVHSSSLVADKTDSTLTALEACRFDKIKPVRESLSEALNVWKNIAGKGE 325