Miyakogusa Predicted Gene

Lj0g3v0358949.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0358949.1 tr|C7J435|C7J435_ORYSJ Os06g0170650 protein
OS=Oryza sativa subsp. japonica GN=Os06g0170650 PE=4
SV=,23.43,2e-18,BED zinc finger,Zinc finger, BED-type predicted;
Ribonuclease H-like,Ribonuclease H-like domain; DUF,CUFF.24695.1
         (553 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G18560.1 | Symbols:  | BED zinc finger ;hAT family dimerisati...   728   0.0  
AT3G42170.1 | Symbols:  | BED zinc finger ;hAT family dimerisati...    96   5e-20

>AT1G18560.1 | Symbols:  | BED zinc finger ;hAT family dimerisation
           domain | chr1:6385614-6388005 FORWARD LENGTH=690
          Length = 690

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/546 (62%), Positives = 439/546 (80%), Gaps = 11/546 (2%)

Query: 16  FRTTYKDDHKSMMDLALISNMDPVNIGLGCSEKQVPVTSLKP-RKKTMTSVYLKFFETAA 74
           F+T  + + K+MMD+ L+ + DP++IGLG S+K     S+ P RKKTMTSVYLK+FETA 
Sbjct: 9   FKTYKEMEPKAMMDMTLVPHSDPIDIGLGSSDKS---NSVPPKRKKTMTSVYLKYFETAP 65

Query: 75  DGKTRRCKFCGQSYSIATATGNLGRHLANRHPGYDKSG-DAVSNSASRST--VTIKKSQP 131
           D KTR+CKFCGQSYSIATATGNLGRHL NRHPGYDK+  D V++S+   T    +K SQ 
Sbjct: 66  DSKTRKCKFCGQSYSIATATGNLGRHLTNRHPGYDKAAADVVTSSSVPQTPPAVVKPSQS 125

Query: 132 QGKPNQVDYDHLNWLIVRWLVLASLPPSTLEEKWLVNSYKFLNPSIQLWPSDKYRTVLDE 191
           Q K  Q+DYDHLNWL+++WL L+SLPPST++E WL NS+KFL PSIQLWP++KY+ +LDE
Sbjct: 126 QSKVPQLDYDHLNWLVLKWLALSSLPPSTVDETWLGNSFKFLKPSIQLWPAEKYKAILDE 185

Query: 192 VFRSMREDVRALLEQVSTKLSITLDFWTSFEQIFYMSITCQWIDENWSFQKLLLDICRIP 251
           VF SMR DV+  LE + +K+S+TL FW S+E IFYMS+T QWIDENWS  +LLLDICRIP
Sbjct: 186 VFTSMRGDVKTTLEHIQSKVSVTLSFWNSYENIFYMSVTGQWIDENWSSHRLLLDICRIP 245

Query: 252 YPCGGAEIYRCLVKVLKFYNIENRVLSCTHDNSSSAILACHTLKEDLDDQKIGPFCYIPC 311
           YP GG+EIY  L+KVLK Y IE+R+L CTHDNS +AI ACH+LKE  D QK+ PFCYIPC
Sbjct: 246 YPSGGSEIYNSLLKVLKTYAIEDRILCCTHDNSENAIHACHSLKEYFDGQKVLPFCYIPC 305

Query: 312 AARTLDQIIDDGLRSTKQVISKIREFAIELNSSSVISEDFIQLSTAYQEGTWKFPLDVSP 371
           AA+TL+ IID+GL + K +ISK+REF  ELN+S+ +S+DFIQL+TAYQEG WK P+D S 
Sbjct: 306 AAQTLNDIIDEGLATIKPIISKVREFTQELNASTELSDDFIQLTTAYQEGNWKLPIDASS 365

Query: 372 RWSGNYQMLDLFRKAGKSMDAVIRKYEDTLGSKMLLGSSDKSLGNIMHQF--LEPFHKTT 429
           RWSGNYQM+++  KA KS+D+VIRK ED L ++M+L S +K+   I+H +  L+ FHKTT
Sbjct: 366 RWSGNYQMVNILCKASKSLDSVIRKNEDALENRMMLSSVEKNAVTIVHNYLDLDSFHKTT 425

Query: 430 NDICTSKVPTVGLVLFFMDHISETIATCRESRHSPEWLKSAAEEMAKKARNYINQVCNIF 489
           ND+CT+K  TVGL L FMD+ISE I TC++S H+P+WL++ AE MA+KAR+Y  QVCN+F
Sbjct: 426 NDMCTNKDLTVGLALLFMDNISEMITTCQKSCHNPDWLRTCAESMAQKARSYNTQVCNVF 485

Query: 490 TYMTAILDPRLKAELIPDSLNSESFLDEARTHFMRNYSTSHF-SSMSSGYNAQEI-EDGG 547
           TY+TAILDPR+K E IP+++N ES++DEAR+HF+RNYS+SHF SSM+SGY  QE+ E GG
Sbjct: 486 TYITAILDPRIKTEYIPETINLESYIDEARSHFIRNYSSSHFTSSMTSGYRPQEVDEGGG 545

Query: 548 SVSFAE 553
           ++SFAE
Sbjct: 546 NISFAE 551


>AT3G42170.1 | Symbols:  | BED zinc finger ;hAT family dimerisation
           domain | chr3:14321838-14323928 FORWARD LENGTH=696
          Length = 696

 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 116/531 (21%), Positives = 199/531 (37%), Gaps = 60/531 (11%)

Query: 51  PVTSLKPRKKTMTSVYLKFFETAADGKTRR--CKFCGQSYSIATATGNLGRHLANRH--- 105
           P T    R+K  + V+  F   A +   RR  CK C QS++ +      G     RH   
Sbjct: 56  PETQPIKRRKKKSMVWEHFTIEAVEPNCRRAFCKGCNQSFAYSNGNKVAGTSHLKRHIFK 115

Query: 106 ---PGYDKSGDAVSNSASRSTVTIKKSQPQ----GKPNQVDY-----DHLNWLIVRWLVL 153
              P    + D  +N    +  T K   P+     + N   Y     D     I + +++
Sbjct: 116 GTCPALIHTHDNDNNPLMSTPYTPKTDTPRRRYRSQNNASPYVAFNQDKCRQEIAKMIIM 175

Query: 154 ASLPPSTLEEKWLVNSYKFLNPSIQLWPSDKYRTVLDEVFRSMREDVRALLEQVSTKLSI 213
              P   ++    V+  + + P       +  +      + + +++V   LE +  +  +
Sbjct: 176 HDYPLHMVQHPGFVSFVQSIQPHFDAVSFNNVQGDCVATYLAEKQNVMKSLEGIPGRFCL 235

Query: 214 TLDFWTSFEQIFYMSITCQWIDENWSFQKLLLDICRIPYPCGGAEIYRCLVKVLKFYNIE 273
           TLDFWTS   + Y+ IT  +ID +W  QK LL++    YP     +   +   +  + +E
Sbjct: 236 TLDFWTSKLTLGYVFITAHYIDSDWKIQKKLLNVLMESYPEADEALSLAVANCVSEWGLE 295

Query: 274 NRVLSCT--HDNSSSAI-----LACHTLKEDLDDQKIGPFCYIPCAARTLDQIIDDGLRS 326
            ++ + T  H  S+SA+       C      LD    G      C ART   +  D L  
Sbjct: 296 GKLFNVTFNHPASNSAVENIRPQLCIKNPGILD----GQLVIGNCVARTFGSLAKDVLEK 351

Query: 327 TKQVISKIREFAIELNSSSVISEDFIQLSTAYQEGTWK-FPLDVSPRWSGNYQML---DL 382
            K VI  IR+    + +S    E F +L    Q  + K   LD   +W+  Y ML     
Sbjct: 352 GKDVIKNIRDSVKHVKTSESHEERFTELKEQLQVPSEKVLSLDDQTQWNTTYMMLVAASE 411

Query: 383 FRKAGKSMDAVIRKYEDTLGSKMLLGSSDKSLGNIMHQFLEPFHKTTNDICTSKVPTVGL 442
            ++    +D     Y      K    + D      +  FL+P  +  + + ++  P+   
Sbjct: 412 LKEVFSCLDTADPDY------KKPPSAEDWRHVEALCTFLKPLFEAVSTLQSTGNPSA-- 463

Query: 443 VLFFMDHISETIATCRESRHSPEWLKSAAEEMAKKARNYINQVCNIFTYMTAILDPRLKA 502
           V FF +         R       ++   A+ M +K   Y    C++   M  ++DPR K 
Sbjct: 464 VTFFHEVWKTQSDLSRAIAGEDPFVTGIAKTMQEKVDKYWRD-CSLVLAMAVVMDPRFKM 522

Query: 503 ELIPDSLNSESFLDEARTHFMRNYSTSHFSSMSSGYNAQEIEDGGSVSFAE 553
           +L+                    +S S      +G N + ++DG    F E
Sbjct: 523 KLV-------------------EFSFSKIFGEDAGKNIKTVDDGIHELFTE 554