Miyakogusa Predicted Gene

Lj0g3v0358549.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0358549.1 Non Chatacterized Hit- tr|B9RLL7|B9RLL7_RICCO
Kelch repeat protein, putative OS=Ricinus communis
GN=,33.07,2e-16,seg,NULL,CUFF.24665.1
         (260 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G18610.1 | Symbols:  | Galactose oxidase/kelch repeat superfa...    59   3e-09

>AT1G18610.1 | Symbols:  | Galactose oxidase/kelch repeat
           superfamily protein | chr1:6405779-6408831 FORWARD
           LENGTH=556
          Length = 556

 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 57/136 (41%), Gaps = 56/136 (41%)

Query: 3   GILVFFGGCNK--DALDDMYYLYTG----------------------------------- 25
           G LV  GGCNK  +ALDDM+YL TG                                   
Sbjct: 300 GFLVIVGGCNKNLEALDDMFYLQTGLGYDARFDQNVGMLSLKKQLKIKCQEQSHASSLYD 359

Query: 26  ----RLNID---------------PGKRACQVKVTGSNSYGYTIETIIDGKRFHGILFRD 66
               R+N+D                GK   Q ++T S   GYT+ET+IDGK   G+LF +
Sbjct: 360 KSLVRINMDHQGRGNFGLNTCQFNEGKMMFQARITESYPVGYTMETMIDGKVLRGVLFSN 419

Query: 67  KPNPLNPATNTSSRRK 82
           K + + PA  + SR++
Sbjct: 420 KRSSILPADQSFSRKR 435