Miyakogusa Predicted Gene

Lj0g3v0358459.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0358459.1 tr|B9HBR7|B9HBR7_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_561442 PE=4 SV=1,54.05,2e-19,
,CUFF.24659.1
         (108 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G22280.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    91   1e-19
AT5G22280.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    82   7e-17
AT3G44280.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    72   9e-14
AT5G22280.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    59   8e-10
AT5G06265.3 | Symbols:  | hyaluronan mediated motility receptor-...    50   3e-07
AT5G06265.2 | Symbols:  | hyaluronan mediated motility receptor-...    50   3e-07
AT5G06265.1 | Symbols:  | hyaluronan mediated motility receptor-...    50   3e-07

>AT5G22280.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; EXPRESSED IN: 22 plant structures; EXPRESSED
           DURING: 13 growth stages; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT3G44280.1);
           Has 82 Blast hits to 82 proteins in 13 species: Archae -
           0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr5:7374211-7375112 REVERSE LENGTH=108
          Length = 108

 Score = 91.3 bits (225), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/109 (47%), Positives = 72/109 (66%), Gaps = 2/109 (1%)

Query: 1   MSRPMXXXXXXXXXXXTSQFEWKQPLVADVDSNPNVSQKQRQISKPEETVKEKIILVQEK 60
           MSRP+           TSQFEW+QPL+ ++D+ P++SQK +QI+K EE VKEKIIL QE+
Sbjct: 1   MSRPIMLVFLLVILIVTSQFEWRQPLL-ELDAAPSLSQKHQQIAKREEAVKEKIILSQER 59

Query: 61  NIRRLNELVRHLQEQLQQCRXXXXXXXXXXXXLTER-ILELERQQILED 108
           +I+RLN+LVR LQ QLQ+C+               +  +ELER+ I+ED
Sbjct: 60  HIQRLNDLVRSLQMQLQRCKGENETRNATETSHNNKQFIELERKHIVED 108


>AT5G22280.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; EXPRESSED IN: 22 plant
           structures; EXPRESSED DURING: 13 growth stages; BEST
           Arabidopsis thaliana protein match is: unknown protein
           (TAIR:AT3G44280.1); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr5:7374211-7375538 REVERSE LENGTH=100
          Length = 100

 Score = 82.0 bits (201), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 64/90 (71%), Gaps = 2/90 (2%)

Query: 20  FEWKQPLVADVDSNPNVSQKQRQISKPEETVKEKIILVQEKNIRRLNELVRHLQEQLQQC 79
           FEW+QPL+ ++D+ P++SQK +QI+K EE VKEKIIL QE++I+RLN+LVR LQ QLQ+C
Sbjct: 12  FEWRQPLL-ELDAAPSLSQKHQQIAKREEAVKEKIILSQERHIQRLNDLVRSLQMQLQRC 70

Query: 80  RXXXXXXXXXXXXLTER-ILELERQQILED 108
           +               +  +ELER+ I+ED
Sbjct: 71  KGENETRNATETSHNNKQFIELERKHIVED 100


>AT3G44280.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; EXPRESSED IN: 24 plant structures; EXPRESSED
           DURING: 15 growth stages; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT5G22280.1);
           Has 82 Blast hits to 82 proteins in 13 species: Archae -
           0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr3:15968760-15970532 REVERSE LENGTH=108
          Length = 108

 Score = 71.6 bits (174), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 52/109 (47%), Positives = 71/109 (65%), Gaps = 2/109 (1%)

Query: 1   MSRPMXXXXXXXXXXXTSQFEWKQPLVADVDSNPNVSQKQRQISKPEETVKEKIILVQEK 60
           MS+P+           TSQFEW+QPLV ++D+  + SQKQ+QIS  EE VKEKII+ QE+
Sbjct: 1   MSKPVLLVCLLVILIVTSQFEWRQPLV-ELDTATSSSQKQQQISDREEAVKEKIIISQER 59

Query: 61  NIRRLNELVRHLQEQLQQCRXX-XXXXXXXXXXLTERILELERQQILED 108
           +I+RLNELVR LQ QL QC+             + ++ +E+ER+QILE 
Sbjct: 60  HIQRLNELVRSLQLQLLQCKGENETQNATKSYHINKQFIEVERKQILEG 108


>AT5G22280.3 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN: endomembrane
          system; EXPRESSED IN: 22 plant structures; EXPRESSED
          DURING: 13 growth stages. | chr5:7374272-7375112
          REVERSE LENGTH=136
          Length = 136

 Score = 58.5 bits (140), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 1/71 (1%)

Query: 1  MSRPMXXXXXXXXXXXTSQFEWKQPLVADVDSNPNVSQKQRQISKPEETVKEKIILVQEK 60
          MSRP+           TSQFEW+QPL+ ++D+ P++SQK +QI+K EE VKEK+ LV++ 
Sbjct: 1  MSRPIMLVFLLVILIVTSQFEWRQPLL-ELDAAPSLSQKHQQIAKREEAVKEKMRLVEKH 59

Query: 61 NIRRLNELVRH 71
           +  L  L  H
Sbjct: 60 RLIGLATLKFH 70


>AT5G06265.3 | Symbols:  | hyaluronan mediated motility
          receptor-related | chr5:1906596-1907382 FORWARD
          LENGTH=106
          Length = 106

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 4/84 (4%)

Query: 1  MSRPMXXXXXXXXXXXTSQFEWKQPLV--ADVDSNPNV--SQKQRQISKPEETVKEKIIL 56
          M+R             TSQFEW + +   ++  S P +   ++Q+ I + +E+V+ K IL
Sbjct: 1  MTRSWVLLFVLMFIVLTSQFEWNEQVENESETSSRPLILSDKEQQHIPQGKESVQVKKIL 60

Query: 57 VQEKNIRRLNELVRHLQEQLQQCR 80
           QEK I++LNELVR L+ QL QCR
Sbjct: 61 FQEKKIQKLNELVRDLRRQLLQCR 84


>AT5G06265.2 | Symbols:  | hyaluronan mediated motility
          receptor-related | chr5:1906596-1907382 FORWARD
          LENGTH=106
          Length = 106

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 4/84 (4%)

Query: 1  MSRPMXXXXXXXXXXXTSQFEWKQPLV--ADVDSNPNV--SQKQRQISKPEETVKEKIIL 56
          M+R             TSQFEW + +   ++  S P +   ++Q+ I + +E+V+ K IL
Sbjct: 1  MTRSWVLLFVLMFIVLTSQFEWNEQVENESETSSRPLILSDKEQQHIPQGKESVQVKKIL 60

Query: 57 VQEKNIRRLNELVRHLQEQLQQCR 80
           QEK I++LNELVR L+ QL QCR
Sbjct: 61 FQEKKIQKLNELVRDLRRQLLQCR 84


>AT5G06265.1 | Symbols:  | hyaluronan mediated motility
          receptor-related | chr5:1906596-1907382 FORWARD
          LENGTH=106
          Length = 106

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 4/84 (4%)

Query: 1  MSRPMXXXXXXXXXXXTSQFEWKQPLV--ADVDSNPNV--SQKQRQISKPEETVKEKIIL 56
          M+R             TSQFEW + +   ++  S P +   ++Q+ I + +E+V+ K IL
Sbjct: 1  MTRSWVLLFVLMFIVLTSQFEWNEQVENESETSSRPLILSDKEQQHIPQGKESVQVKKIL 60

Query: 57 VQEKNIRRLNELVRHLQEQLQQCR 80
           QEK I++LNELVR L+ QL QCR
Sbjct: 61 FQEKKIQKLNELVRDLRRQLLQCR 84