Miyakogusa Predicted Gene
- Lj0g3v0358309.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0358309.1 tr|I1M0W9|I1M0W9_SOYBN Structural maintenance of
chromosomes protein OS=Glycine max PE=3
SV=1,86.43,0,SMC_N,RecF/RecN/SMC; SMC_hinge,SMCs flexible hinge; no
description,NULL; STRUCTURAL MAINTENANCE OF C,CUFF.24649.1
(641 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G62410.1 | Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 | structural... 918 0.0
AT3G47460.1 | Symbols: ATSMC2 | Structural maintenance of chromo... 904 0.0
AT2G27170.2 | Symbols: TTN7, SMC3 | Structural maintenance of ch... 123 3e-28
AT2G27170.1 | Symbols: TTN7, SMC3 | Structural maintenance of ch... 123 3e-28
AT5G48600.2 | Symbols: SMC3 | structural maintenance of chromoso... 83 5e-16
AT5G48600.1 | Symbols: ATSMC3, ATCAP-C, ATSMC4, SMC3 | structura... 83 6e-16
AT3G54670.3 | Symbols: TTN8 | Structural maintenance of chromoso... 74 3e-13
AT3G54670.1 | Symbols: TTN8, SMC1, ATSMC1 | Structural maintenan... 64 4e-10
AT3G54670.2 | Symbols: TTN8, SMC1, ATSMC1 | Structural maintenan... 58 2e-08
>AT5G62410.1 | Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 | structural
maintenance of chromosomes 2 | chr5:25056308-25062436
FORWARD LENGTH=1175
Length = 1175
Score = 918 bits (2372), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/641 (72%), Positives = 531/641 (82%), Gaps = 1/641 (0%)
Query: 1 MTALEVTAGGKLYNVVVDTESTGKQLLQNGGLKRRVTIIPLNKIXXXXXXXXXXXXAARL 60
MTALEVTAGGKLY+VVVD+E TGKQLLQNG L+RRVTIIPLNKI ARL
Sbjct: 536 MTALEVTAGGKLYDVVVDSEDTGKQLLQNGALRRRVTIIPLNKIQSYVVQPRVQQATARL 595
Query: 61 VGKENAAVALSLVGYDEDLKTAMEYVFGSTFVCKTIDAAKEVAFNREIHSTSVTLEGDIF 120
VGK+NA +ALSLVGY ++LK AMEYVFGSTFVCKT D AKEVAFNR+I + SVTLEGDIF
Sbjct: 596 VGKDNAELALSLVGYSDELKNAMEYVFGSTFVCKTTDVAKEVAFNRDIRTPSVTLEGDIF 655
Query: 121 QPSGLLTGGSRKGSGDLLRQLDALAEANSNLSEHQKRLSEIEEKIMKLLPLQKKFKDLKA 180
QPSGLLTGGSRKG GD LR+L LAEA S L HQKRL+++E +I +L PLQ KF D+ A
Sbjct: 656 QPSGLLTGGSRKGGGDRLRKLHDLAEAESELQGHQKRLADVESQIKELQPLQMKFTDVYA 715
Query: 181 QLELKSYDLSLFQSRAEQNEHHKLGELVKKIEQELEEAKSAVKEKQLLYEDCVKTVSTLE 240
QLELK+YDLSLF RAEQNEHHKLGE VKK+E+ELEEAKS +KEK+L Y++C VS LE
Sbjct: 716 QLELKTYDLSLFLKRAEQNEHHKLGEAVKKLEEELEEAKSQIKEKELAYKNCFDAVSKLE 775
Query: 241 TSIKEHNNSRESRLKGLEKKIKSVKSQMQSSLKDLKVHDNEKERLVMEMDAVIQEQASLE 300
SIK+H+ +RE RLK LEK IK++K+QMQ++ KDLK H+NEKE+LVME +A+ QEQ+SLE
Sbjct: 776 NSIKDHDKNREGRLKDLEKNIKTIKAQMQAASKDLKSHENEKEKLVMEEEAMKQEQSSLE 835
Query: 301 NQLEAMQTQISNLVSELEEQRSTVVAARNNLDQVQSQLNSVRQKMKECDKEINGIINEQK 360
+ L +++TQIS L SE++EQR+ V A + D+ ++L + KMKECD +I+G + +Q+
Sbjct: 836 SHLTSLETQISTLTSEVDEQRAKVDALQKIHDESLAELKLIHAKMKECDTQISGFVTDQE 895
Query: 361 KLEHRLSESSLERKRMENEVKRMEMEQKDCSVRVDKLIEKHSWIASEKQLFGRSGTDYDF 420
K +LS+ LERK++ENEV RME + KDCSV+VDKL+EKH+WIASEKQLFG+ GTDYDF
Sbjct: 896 KCLQKLSDMKLERKKLENEVVRMETDHKDCSVKVDKLVEKHTWIASEKQLFGKGGTDYDF 955
Query: 421 SSRDPGKAREELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKK 480
S DP ARE+LEKLQ++QSGLEKRVNKKVMAMFEKAEDEYN L+SKKN IENDKSKI K
Sbjct: 956 ESCDPYVAREKLEKLQSDQSGLEKRVNKKVMAMFEKAEDEYNALISKKNTIENDKSKITK 1015
Query: 481 VIEELDEKKKETLNVTWTKVNSDFGSIFSTLLPGTMAKLEPPEGCSFLDGLEVKVAFGSV 540
VIEELDEKKKETL VTW KVN DFGSIFSTLLPGTMAKLEPPE +FLDGLEV+VAFG V
Sbjct: 1016 VIEELDEKKKETLKVTWVKVNQDFGSIFSTLLPGTMAKLEPPEDGNFLDGLEVRVAFGKV 1075
Query: 541 WKQSLSELSGGQRXXXXXXXXXXXXXFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPH 600
WKQSLSELSGGQR FKPAPLYILDEVDAALDLSHTQNIGRMI+AHFPH
Sbjct: 1076 WKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIRAHFPH 1135
Query: 601 SQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVATKQNK 641
SQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTV TKQ K
Sbjct: 1136 SQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTV-TKQTK 1175
>AT3G47460.1 | Symbols: ATSMC2 | Structural maintenance of chromosomes
(SMC) family protein | chr3:17486765-17493178 FORWARD
LENGTH=1171
Length = 1171
Score = 904 bits (2336), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/640 (70%), Positives = 523/640 (81%), Gaps = 4/640 (0%)
Query: 1 MTALEVTAGGKLYNVVVDTESTGKQLLQNGGLKRRVTIIPLNKIXXXXXXXXXXXXAARL 60
MTALEVTAGGKL+NV+VDTE TGKQLLQ G L+RRVTIIPLNKI
Sbjct: 536 MTALEVTAGGKLFNVIVDTEDTGKQLLQKGDLRRRVTIIPLNKIQSHLVPPRVQQAT--- 592
Query: 61 VGKENAAVALSLVGYDEDLKTAMEYVFGSTFVCKTIDAAKEVAFNREIHSTSVTLEGDIF 120
VGK NA +ALSLVGY E+LK AMEYVFGSTFVCKT DAAKEVAFNREI + SVTLEGD+F
Sbjct: 593 VGKGNAELALSLVGYSEELKNAMEYVFGSTFVCKTTDAAKEVAFNREIRTPSVTLEGDVF 652
Query: 121 QPSGLLTGGSRKGSGDLLRQLDALAEANSNLSEHQKRLSEIEEKIMKLLPLQKKFKDLKA 180
QPSGLLTGGSRKG GDLLRQL LAEA + HQK LSEIE I +L PLQ KF D+KA
Sbjct: 653 QPSGLLTGGSRKGGGDLLRQLHDLAEAETKFRAHQKSLSEIEANIKELQPLQTKFTDMKA 712
Query: 181 QLELKSYDLSLFQSRAEQNEHHKLGELVKKIEQELEEAKSAVKEKQLLYEDCVKTVSTLE 240
QLELK YD+SLF RAEQNEHHKLG+ VKK+E+E+EE +S +KEK+ LY+ C TVSTLE
Sbjct: 713 QLELKMYDMSLFLKRAEQNEHHKLGDAVKKLEEEVEEMRSQIKEKEGLYKSCADTVSTLE 772
Query: 241 TSIKEHNNSRESRLKGLEKKIKSVKSQMQSSLKDLKVHDNEKERLVMEMDAVIQEQASLE 300
SIK+H+ +RE RLK LEK IK++K+++Q+S KDLK H+N +ERLVME +AV QEQ+ L+
Sbjct: 773 KSIKDHDKNREGRLKDLEKNIKTLKARIQASSKDLKGHENVRERLVMEQEAVTQEQSYLK 832
Query: 301 NQLEAMQTQISNLVSELEEQRSTVVAARNNLDQVQSQLNSVRQKMKECDKEINGIINEQK 360
+QL +++TQIS L S++ QR+ V A + + DQ S+L + KMKECD +I+G I EQ+
Sbjct: 833 SQLTSLRTQISTLASDVGNQRAKVDAIQKDHDQSLSELKLIHAKMKECDTQISGSIAEQE 892
Query: 361 KLEHRLSESSLERKRMENEVKRMEMEQKDCSVRVDKLIEKHSWIASEKQLFGRSGTDYDF 420
K ++S+ L+RK++ENEV RMEME K+CSV+VDKL+EKH+WI SEK+LFG GTDYDF
Sbjct: 893 KCLQKISDMKLDRKKLENEVTRMEMEHKNCSVKVDKLVEKHTWITSEKRLFGNGGTDYDF 952
Query: 421 SSRDPGKAREELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKK 480
SRDP KAREELE+LQ +QS LEKRVNKKV AMFEKAEDEYN LM+KKNIIE DKSKIKK
Sbjct: 953 ESRDPHKAREELERLQTDQSSLEKRVNKKVTAMFEKAEDEYNALMTKKNIIETDKSKIKK 1012
Query: 481 VIEELDEKKKETLNVTWTKVNSDFGSIFSTLLPGTMAKLEPPEGCSFLDGLEVKVAFGSV 540
VIEELDEKKKETL VTW KVN DFGSIFSTLLPGTM+KLEPPEG +FLDGLEV+VAFG V
Sbjct: 1013 VIEELDEKKKETLKVTWVKVNQDFGSIFSTLLPGTMSKLEPPEGGTFLDGLEVRVAFGDV 1072
Query: 541 WKQSLSELSGGQRXXXXXXXXXXXXXFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPH 600
WKQSLSELSGGQR FKPAP+YILDEVDAALDLSHTQNIGRMIK+HFPH
Sbjct: 1073 WKQSLSELSGGQRSLLALSLILALLLFKPAPIYILDEVDAALDLSHTQNIGRMIKSHFPH 1132
Query: 601 SQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVATKQN 640
SQFIVVSLKEGMF+NA+VLFRTKFVDGVSTVQRTV TKQ+
Sbjct: 1133 SQFIVVSLKEGMFSNADVLFRTKFVDGVSTVQRTV-TKQS 1171
>AT2G27170.2 | Symbols: TTN7, SMC3 | Structural maintenance of
chromosomes (SMC) family protein | chr2:11609319-11617064
REVERSE LENGTH=1204
Length = 1204
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 157/692 (22%), Positives = 304/692 (43%), Gaps = 107/692 (15%)
Query: 1 MTALEVTAGGKLYNVVVDTESTGKQLLQN-----GGLKRRVTIIPLNKIXXXXXXXXXXX 55
TA+EVTAG L+NVVV+ + +++++ GG RVT +PLN+I
Sbjct: 539 FTAVEVTAGNSLFNVVVENDDISTKIIRHLNSLKGG---RVTFLPLNRIKAPRVNYPKDS 595
Query: 56 XAARLVGKENAAVALSLVGYDEDLKTAMEYVFGSTFVCKTIDAAKEVAFNREIHSTSVTL 115
A L+ K + +D + A+ VFG T VC+ ++ A VA N ++ +T+
Sbjct: 596 DAIPLLKK---------LKFDSKFEPALGQVFGRTVVCRDLNVATRVAKNDDL--DCITM 644
Query: 116 EGDIFQPSGLLTGGSRKGSGDLLRQLDALAEANSNLSEHQKRLSE-------IEEKIMKL 168
EGD G +TGG LR ++ + + +++E +K L + I+++I +L
Sbjct: 645 EGDQVSRKGGMTGGFYDHRRSKLRFMNIIMQNTKSINEKEKELEDVRRQLQVIDQQITQL 704
Query: 169 LPLQKKFKDLKAQLELKSYDLSLFQSRAEQNEH--HKLGE----LVKKIEQELEEAKSAV 222
+ Q++ + +L+ L + A + +H HK E L+ I +++ +S++
Sbjct: 705 VTEQQRLEADWTLCKLQVEQLKQEIANANKQKHAIHKAIEYKEKLLGDIRTRIDQVRSSM 764
Query: 223 KEKQLLYEDCVKTVSTLETSIKEHNNSRESRLKGLEKKIKSVKSQMQSSLKDLKVHDNEK 282
K+ + + T + +H E + S++ +KDLK +
Sbjct: 765 SMKE----------AEMGTELVDHLTPEE----------REQLSKLNPEIKDLK-----E 799
Query: 283 ERLVMEMDAVIQEQASLENQLEA-MQTQISNLVSELEEQRSTVVAARNNLDQVQSQLNSV 341
++ + D + E+ + + +LEA + T + ++EL+ +T+ + + D + S +
Sbjct: 800 KKFAYQADRI--ERETRKAELEANIATNLKRRITELQ---ATIASIDD--DSLPSSAGTK 852
Query: 342 RQKMKECDKEINGIINEQKKLEHRLSESSLERKRMENEVKRMEMEQKDC----------- 390
Q++ + +N E K + + E + + K++++E +++ + DC
Sbjct: 853 EQELDDAKLSVNEAAKELKSVCDSIDEKTKQIKKIKDEKAKLKTLEDDCKGTLQDLDKKL 912
Query: 391 ----SVRVDKLIEKHSWIASEKQLFGRSGTDYDFSSRDPGKAREELEKLQAEQSGLEKRV 446
S+R L ++ + + L S +D R K +++ +EQ V
Sbjct: 913 EELFSLRNTLLAKQDEYTKKIRGLGPLSSDAFDTYKRKNIKELQKMLHRCSEQLQQFSHV 972
Query: 447 NKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKKVIEELDEKKKETLNVTWTKVNSDFGS 506
NKK + + ++ +L +++ ++ KIK++I LD++K E++ T+ V F
Sbjct: 973 NKKALDQYVNFTEQREELQNRQAELDAGDEKIKELITVLDQRKDESIERTFKGVAHHFRD 1032
Query: 507 IFSTLLPGTMAKL-----------------------EPPEG-CSFLDGLEVKVAF-GSVW 541
+FS L+ L EG G++VKV+F G
Sbjct: 1033 VFSELVQDGYGNLIIMKKKDLDNDDEDDDDDDGGREAVTEGRVEKYIGVKVKVSFTGQGE 1092
Query: 542 KQSLSELSGGQRXXXXXXXXXXXXXFKPAPLYILDEVDAALDLSHTQNIGRMIK--AHFP 599
Q + +LSGGQ+ PAP Y+ DE+DAALD + +G +I+ A
Sbjct: 1093 TQLMKQLSGGQKTVVALALIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNLIRRLADDY 1152
Query: 600 HSQFIVVSLKEGMFNNANVLFRTKFVDGVSTV 631
+QFI + + + A+ ++ + VS V
Sbjct: 1153 GTQFITTTFRPELVRVADKIYGVFHKNRVSIV 1184
>AT2G27170.1 | Symbols: TTN7, SMC3 | Structural maintenance of
chromosomes (SMC) family protein | chr2:11609319-11617064
REVERSE LENGTH=1204
Length = 1204
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 157/692 (22%), Positives = 304/692 (43%), Gaps = 107/692 (15%)
Query: 1 MTALEVTAGGKLYNVVVDTESTGKQLLQN-----GGLKRRVTIIPLNKIXXXXXXXXXXX 55
TA+EVTAG L+NVVV+ + +++++ GG RVT +PLN+I
Sbjct: 539 FTAVEVTAGNSLFNVVVENDDISTKIIRHLNSLKGG---RVTFLPLNRIKAPRVNYPKDS 595
Query: 56 XAARLVGKENAAVALSLVGYDEDLKTAMEYVFGSTFVCKTIDAAKEVAFNREIHSTSVTL 115
A L+ K + +D + A+ VFG T VC+ ++ A VA N ++ +T+
Sbjct: 596 DAIPLLKK---------LKFDSKFEPALGQVFGRTVVCRDLNVATRVAKNDDL--DCITM 644
Query: 116 EGDIFQPSGLLTGGSRKGSGDLLRQLDALAEANSNLSEHQKRLSE-------IEEKIMKL 168
EGD G +TGG LR ++ + + +++E +K L + I+++I +L
Sbjct: 645 EGDQVSRKGGMTGGFYDHRRSKLRFMNIIMQNTKSINEKEKELEDVRRQLQVIDQQITQL 704
Query: 169 LPLQKKFKDLKAQLELKSYDLSLFQSRAEQNEH--HKLGE----LVKKIEQELEEAKSAV 222
+ Q++ + +L+ L + A + +H HK E L+ I +++ +S++
Sbjct: 705 VTEQQRLEADWTLCKLQVEQLKQEIANANKQKHAIHKAIEYKEKLLGDIRTRIDQVRSSM 764
Query: 223 KEKQLLYEDCVKTVSTLETSIKEHNNSRESRLKGLEKKIKSVKSQMQSSLKDLKVHDNEK 282
K+ + + T + +H E + S++ +KDLK +
Sbjct: 765 SMKE----------AEMGTELVDHLTPEE----------REQLSKLNPEIKDLK-----E 799
Query: 283 ERLVMEMDAVIQEQASLENQLEA-MQTQISNLVSELEEQRSTVVAARNNLDQVQSQLNSV 341
++ + D + E+ + + +LEA + T + ++EL+ +T+ + + D + S +
Sbjct: 800 KKFAYQADRI--ERETRKAELEANIATNLKRRITELQ---ATIASIDD--DSLPSSAGTK 852
Query: 342 RQKMKECDKEINGIINEQKKLEHRLSESSLERKRMENEVKRMEMEQKDC----------- 390
Q++ + +N E K + + E + + K++++E +++ + DC
Sbjct: 853 EQELDDAKLSVNEAAKELKSVCDSIDEKTKQIKKIKDEKAKLKTLEDDCKGTLQDLDKKL 912
Query: 391 ----SVRVDKLIEKHSWIASEKQLFGRSGTDYDFSSRDPGKAREELEKLQAEQSGLEKRV 446
S+R L ++ + + L S +D R K +++ +EQ V
Sbjct: 913 EELFSLRNTLLAKQDEYTKKIRGLGPLSSDAFDTYKRKNIKELQKMLHRCSEQLQQFSHV 972
Query: 447 NKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKKVIEELDEKKKETLNVTWTKVNSDFGS 506
NKK + + ++ +L +++ ++ KIK++I LD++K E++ T+ V F
Sbjct: 973 NKKALDQYVNFTEQREELQNRQAELDAGDEKIKELITVLDQRKDESIERTFKGVAHHFRD 1032
Query: 507 IFSTLLPGTMAKL-----------------------EPPEG-CSFLDGLEVKVAF-GSVW 541
+FS L+ L EG G++VKV+F G
Sbjct: 1033 VFSELVQDGYGNLIIMKKKDLDNDDEDDDDDDGGREAVTEGRVEKYIGVKVKVSFTGQGE 1092
Query: 542 KQSLSELSGGQRXXXXXXXXXXXXXFKPAPLYILDEVDAALDLSHTQNIGRMIK--AHFP 599
Q + +LSGGQ+ PAP Y+ DE+DAALD + +G +I+ A
Sbjct: 1093 TQLMKQLSGGQKTVVALALIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNLIRRLADDY 1152
Query: 600 HSQFIVVSLKEGMFNNANVLFRTKFVDGVSTV 631
+QFI + + + A+ ++ + VS V
Sbjct: 1153 GTQFITTTFRPELVRVADKIYGVFHKNRVSIV 1184
>AT5G48600.2 | Symbols: SMC3 | structural maintenance of chromosome 3
| chr5:19701908-19709091 FORWARD LENGTH=1244
Length = 1244
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 131/607 (21%), Positives = 269/607 (44%), Gaps = 97/607 (15%)
Query: 76 DEDLKTAMEYVFGSTFVCKTIDAAKEVAF--NREIHSTSVTLEGDIFQPSGLLTG----- 128
DE +K A G+T V K +D A +A+ NRE V L+G +F+ SG ++G
Sbjct: 644 DERMKLAFYAALGNTVVAKDLDQATRIAYGGNREFRRV-VALDGALFEKSGTMSGGGGKA 702
Query: 129 ------GSRKGSGDLLRQLDALAEANSNLSEHQKRLSEIEEKI----------------- 165
S + +G +A+A A + LS+ L+ I EK+
Sbjct: 703 RGGRMGTSIRATG---VSGEAVANAENELSKIVDMLNNIREKVGNAVRQYRAAENEVSGL 759
Query: 166 -MKLLPLQKKFKDLKAQLELKSYDLSLFQ--SRAEQNEHHKLGELVKKIEQELEEAKSAV 222
M+L Q++ + L ++ L+ + S+ + +E +L EL K I +E +E ++
Sbjct: 760 EMELAKSQREIESLNSEHNYLEKQLASLEAASQPKTDEIDRLKELKKIISKEEKEIENLE 819
Query: 223 KEKQLLYEDCVKTVSTLETSIKEHNNSRESRLKGLEKKIKSVKSQMQSSLKDL-----KV 277
K + L + ++ L+T+I+ N+ +LKG + K++ +++ + + ++ ++
Sbjct: 820 KGSKQLKDKALE----LQTNIE---NAGGEKLKGQKAKVEKIQTDIDKNNTEINRCNVQI 872
Query: 278 HDNEK--ERLVMEMDAVIQEQASLENQLEAMQTQISNLVSE--------------LEEQR 321
N+K ++L ++ +E+ LE + E + ++ + ++E +
Sbjct: 873 ETNQKLIKKLTKGIEEATREKERLEGEKENLHVTFKDITQKAFEIQETYKKTQQLIDEHK 932
Query: 322 STVVAARNNLDQVQSQLNSVRQKMKECDKEINGIINEQKKLEHRLSESSLERKRMENEV- 380
+ A+++ + ++ ++ ++ + + ++ + + +LE R E ++K + ++
Sbjct: 933 DVLTGAKSDYENLKKSVDELKASRVDAEFKVQDMKKKYNELEMR--EKGYKKKLNDLQIA 990
Query: 381 --KRMEMEQKDCSVRVDKLIEKHSWIASEKQLFGRSGTDYDFSSRDPGKAREELEKLQAE 438
K ME QKD V DKL T D + + + LE +
Sbjct: 991 FTKHMEQIQKDL-VDPDKL----------------QATLMDNNLNEACDLKRALEMVALL 1033
Query: 439 QSGL-EKRVNKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKKVIEELDEKKKETLNVTW 497
++ L E N +A + + YN + + N + ++ +K +EL +++ + +
Sbjct: 1034 EAQLKELNPNLDSIAEYRSKVELYNGRVDELNSVTQERDDTRKQYDELRKRRLDEFMAGF 1093
Query: 498 TKVNSDFGSIFSTLLPGTMAKLEPPEGCSFLDGLEVKVAFG-----SVWKQSLSELSGGQ 552
++ ++ + G A+LE + LD V F WK +++ LSGG+
Sbjct: 1094 NTISLKLKEMYQMITLGGDAELELVDS---LDPFSEGVVFSVRPPKKSWK-NIANLSGGE 1149
Query: 553 RXXXXXXXXXXXXXFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPHSQFIVVSLKEGM 612
+ +KP PLY++DE+DAALD + +G +K +QFI++SL+ M
Sbjct: 1150 KTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNM 1209
Query: 613 FNNANVL 619
F A+ L
Sbjct: 1210 FELADRL 1216
>AT5G48600.1 | Symbols: ATSMC3, ATCAP-C, ATSMC4, SMC3 | structural
maintenance of chromosome 3 | chr5:19701908-19709091
FORWARD LENGTH=1241
Length = 1241
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 133/605 (21%), Positives = 255/605 (42%), Gaps = 96/605 (15%)
Query: 76 DEDLKTAMEYVFGSTFVCKTIDAAKEVAF--NREIHSTSVTLEGDIFQPSGLLTG----- 128
DE +K A G+T V K +D A +A+ NRE V L+G +F+ SG ++G
Sbjct: 644 DERMKLAFYAALGNTVVAKDLDQATRIAYGGNREFRRV-VALDGALFEKSGTMSGGGGKA 702
Query: 129 ------GSRKGSGDLLRQLDALAEANSNLSEHQKRLSEIEEKIMKLLPLQKKFKDLKAQL 182
S + +G +A+A A + LS+ L+ I EK+
Sbjct: 703 RGGRMGTSIRATG---VSGEAVANAENELSKIVDMLNNIREKVGN--------------- 744
Query: 183 ELKSYDLSLFQSRAEQNEHHKLGELVKKIEQELEEAKSAVK--EKQLLYEDCVKTVSTLE 240
++ Q RA +NE L + K ++E+E S EKQL + T E
Sbjct: 745 -------AVRQYRAAENEVSGLEMELAKSQREIESLNSEHNYLEKQLASLEAASQPKTDE 797
Query: 241 TS----IKEHNNSRESRLKGLEKKIKSVKSQMQSSLKD-----LKVHDNEKERLVMEMDA 291
+K+ + E ++ LEK K +K ++Q+++++ LK + E++ ++D
Sbjct: 798 IDRLKELKKIISKEEKEIENLEKGSKQLKDKLQTNIENAGGEKLKGQKAKVEKIQTDIDK 857
Query: 292 VIQEQASLENQLEAMQTQISNLVSELEE---QRSTVVAARNNLDQVQSQLNSVRQKMKEC 348
E Q+E Q I L +EE ++ + + NL + +++E
Sbjct: 858 NNTEINRCNVQIETNQKLIKKLTKGIEEATREKERLEGEKENLHVTFKDITQKAFEIQET 917
Query: 349 DKEINGIINEQKKLEHRLSESSLERKRMENEVKRMEMEQKDCSVRVDKLIEKHSWIASEK 408
K+ +I+E K + L+ + + + ++ V ++ + D +V + +K++ + +
Sbjct: 918 YKKTQQLIDEHKDV---LTGAKSDYENLKKSVDELKASRVDAEFKVQDMKKKYNELEMRE 974
Query: 409 QLFGRSGTDYDFSSR-----------DPGK------------------AREELEKLQAEQ 439
+ + + D + DP K A E + L+A+
Sbjct: 975 KGYKKKLNDLQIAFTKHMEQIQKDLVDPDKLQATLMDNNLNEACDLKRALEMVALLEAQL 1034
Query: 440 SGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKKVIEELDEKKKETLNVTWTK 499
L ++ +A + + YN + + N + ++ +K +EL +++ + +
Sbjct: 1035 KELNPNLDS--IAEYRSKVELYNGRVDELNSVTQERDDTRKQYDELRKRRLDEFMAGFNT 1092
Query: 500 VNSDFGSIFSTLLPGTMAKLEPPEGCSFLDGLEVKVAFG-----SVWKQSLSELSGGQRX 554
++ ++ + G A+LE + LD V F WK +++ LSGG++
Sbjct: 1093 ISLKLKEMYQMITLGGDAELELVDS---LDPFSEGVVFSVRPPKKSWK-NIANLSGGEKT 1148
Query: 555 XXXXXXXXXXXXFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPHSQFIVVSLKEGMFN 614
+KP PLY++DE+DAALD + +G +K +QFI++SL+ MF
Sbjct: 1149 LSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFE 1208
Query: 615 NANVL 619
A+ L
Sbjct: 1209 LADRL 1213
>AT3G54670.3 | Symbols: TTN8 | Structural maintenance of chromosomes
(SMC) family protein | chr3:20235818-20243701 FORWARD
LENGTH=1239
Length = 1239
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 159/714 (22%), Positives = 305/714 (42%), Gaps = 135/714 (18%)
Query: 3 ALEVTAGGKLYNVVVDTESTGKQLLQNGGLKR--RVTIIPLN--KIXXXXXXXXXXXXAA 58
A+ V G + VVV+ E+TGK ++ +R +T IPL ++ A
Sbjct: 539 AVTVAMGRFMDAVVVEDENTGKDCIKYLKEQRLPPMTFIPLQSVRVKQVFERLRNLGGTA 598
Query: 59 RLVG---------KENAAVALSLVGY---DEDLKTAMEYVFGSTFVCKTIDAAKEVAFNR 106
+LV E + + + ++ Y D +L+ A+ Y G+T VC ++ AK ++++
Sbjct: 599 KLVFDVIQYPLHISEVSKIYIFVLNYSTFDPELEKAVLYAVGNTLVCDELEEAKVLSWSG 658
Query: 107 EIHSTSVTLEGDIFQPSGLLTG-------------------GSRKGSGDLLRQLDALAEA 147
E VT++G + +G +TG G +K D +QL+ +
Sbjct: 659 ERFKV-VTVDGILLTKAGTMTGGTSGGMEAKSNKWDDKKIEGLKKNKEDFEQQLENIG-- 715
Query: 148 NSNLSEHQKRLSEIEEKIMKLLPLQKKFKDLKAQLELKSYDLSLFQSRAEQNEHHKLGEL 207
++ E Q + SEI KI L+KK + A++E KS L Q EQ E + + E
Sbjct: 716 --SIREMQMKESEISGKIS---GLEKKIQ--YAEIEKKSIKDKLPQ--LEQEERNIIEE- 765
Query: 208 VKKIEQELEEAKSAVKEKQL---------------LYEDCVKTVSTLETSIKEHNNSRES 252
+ +I+ EL +A++ V +++ +Y+D ++V + E E+
Sbjct: 766 IDRIKPELSKARTEVDKRKTEMNKLEKRMNEIVDRIYKDFSQSVGVPNIRVYE-----ET 820
Query: 253 RLKGLEKKIKSVKSQMQSSLKDLKVH-DNEKERLVMEMDAVIQEQ-ASLENQLEAMQTQI 310
+LK EK+ + + ++ + L LK + E+ R V I+ +SLE LE +Q +
Sbjct: 821 QLKTAEKEAEE-RLELSNQLAKLKYQLEYEQNRDVGSRIRKIESSISSLETDLEGIQKTM 879
Query: 311 SNLVSELEEQRSTVVAARNNLDQVQSQLNSVRQKMKECDKEINGIINEQKKLEHRLSESS 370
S E++ T V N ++ + ++ +QK +E +KEI + + +++ +
Sbjct: 880 S-------ERKETAVKITNEINNWKKEMEECKQKSEEYEKEILDWKKQASQATTSITKLN 932
Query: 371 LERKRMENEVKRM-----------EMEQKDCSVRVDKLIEKHSWIASEKQLFGRSGTDYD 419
+ E +++++ E+E V D + E S G +D
Sbjct: 933 RQIHSKETQIEQLISQKQEITEKCELEHITLPVLSDAMEEDDS-----------DGPQFD 981
Query: 420 FSS--------RDPGKAREELE-----KLQAEQSGLEKRV-NKKVMAMFEKAEDEYNDLM 465
FS R P ARE++E K++++ S +E+ N + + +E +++ +
Sbjct: 982 FSELGRAYLQERRPS-AREKVEAEFRQKIESKTSEIERTAPNLRALDQYEAIQEKEKQVS 1040
Query: 466 SKKNIIENDKSKIKKVIEELDEKKKETLNVTWTKVNSDFGSIFSTL-------LPGTMAK 518
+ ++ ++ + +K+ E + + S+ I+ L L GT
Sbjct: 1041 QEFEAARKEEKQVADAFNTVKQKRYELFMEAFNHIASNIDKIYKQLTKSNTHPLGGTAYL 1100
Query: 519 LEPPEGCSFLDGLEVKVAFGSVWKQSLSELSGGQRXXXXXXXXXXXXXFKPAPLYILDEV 578
E FL G++ + + + +LSGG++ ++P+P +ILDEV
Sbjct: 1101 NLENEDDPFLHGIKYTTMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYRPSPFFILDEV 1160
Query: 579 DAALDLSHTQNIGRMIKAHFPHS-------------QFIVVSLKEGMFNNANVL 619
DAALD + + + I++ + Q IV+SLK+ ++ A L
Sbjct: 1161 DAALDNLNVAKVAKFIRSKSCQAARDNQDAEDGNGFQSIVISLKDSFYDKAEAL 1214
>AT3G54670.1 | Symbols: TTN8, SMC1, ATSMC1 | Structural maintenance of
chromosomes (SMC) family protein | chr3:20235818-20243701
FORWARD LENGTH=1238
Length = 1238
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 160/716 (22%), Positives = 304/716 (42%), Gaps = 139/716 (19%)
Query: 3 ALEVTAGGKLYNVVVDTESTGKQLLQNGGLKR--RVTIIPLN--KIXXXXXXXXXXXXAA 58
A+ V G + VVV+ E+TGK ++ +R +T IPL ++ A
Sbjct: 538 AVTVAMGRFMDAVVVEDENTGKDCIKYLKEQRLPPMTFIPLQSVRVKQVFERLRNLGGTA 597
Query: 59 RLVG---------KENAAVALSLVGY---DEDLKTAMEYVFGSTFVCKTIDAAKEVAFNR 106
+LV E + + + ++ Y D +L+ A+ Y G+T VC ++ AK ++++
Sbjct: 598 KLVFDVIQYPLHISEVSKIYIFVLNYSTFDPELEKAVLYAVGNTLVCDELEEAKVLSWSG 657
Query: 107 EIHSTSVTLEGDIFQPSGLLTG-------------------GSRKGSGDLLRQLDALAEA 147
E VT++G + +G +TG G +K D +QL+ +
Sbjct: 658 ERFKV-VTVDGILLTKAGTMTGGTSGGMEAKSNKWDDKKIEGLKKNKEDFEQQLENIG-- 714
Query: 148 NSNLSEHQKRLSEIEEKIMKLLPLQKKFKDLKAQLELKSYDLSLFQSRAEQNEHHKLGEL 207
++ E Q + SEI KI L+KK + A++E KS L Q EQ E + + E
Sbjct: 715 --SIREMQMKESEISGKIS---GLEKKIQ--YAEIEKKSIKDKLPQ--LEQEERNIIEE- 764
Query: 208 VKKIEQELEEAKSAVK-----------EKQL------LYEDCVKTVSTLETSIKEHNNSR 250
+ +I+ EL +A + + EK++ +Y+D ++V + E
Sbjct: 765 IDRIKPELSKAIARTEVDKRKTEMNKLEKRMNEIVDRIYKDFSQSVGVPNIRVYE----- 819
Query: 251 ESRLKGLEKKIKSVKSQMQSSLKDLKVH-DNEKERLVMEMDAVIQEQ-ASLENQLEAMQT 308
E++LK EK+ + + ++ + L LK + E+ R V I+ +SLE LE +Q
Sbjct: 820 ETQLKTAEKEAEE-RLELSNQLAKLKYQLEYEQNRDVGSRIRKIESSISSLETDLEGIQK 878
Query: 309 QISNLVSELEEQRSTVVAARNNLDQVQSQLNSVRQKMKECDKEINGIINEQKKLEHRLSE 368
+S E++ T V N ++ + ++ +QK +E +KEI + + +++
Sbjct: 879 TMS-------ERKETAVKITNEINNWKKEMEECKQKSEEYEKEILDWKKQASQATTSITK 931
Query: 369 SSLERKRMENEVKRM-----------EMEQKDCSVRVDKLIEKHSWIASEKQLFGRSGTD 417
+ + E +++++ E+E V D + E S G
Sbjct: 932 LNRQIHSKETQIEQLISQKQEITEKCELEHITLPVLSDAMEEDDS-----------DGPQ 980
Query: 418 YDFS--------SRDPGKAREELE-----KLQAEQSGLEKRV-NKKVMAMFEKAEDEYND 463
+DFS R P ARE++E K++++ S +E+ N + + +E +++
Sbjct: 981 FDFSELGRAYLQERRPS-AREKVEAEFRQKIESKTSEIERTAPNLRALDQYEAIQEKEKQ 1039
Query: 464 LMSKKNIIENDKSKIKKVIEELDEKKKETLNVTWTKVNSDFGSIFSTL-------LPGTM 516
+ + ++ ++ + +K+ E + + S+ I+ L L GT
Sbjct: 1040 VSQEFEAARKEEKQVADAFNTVKQKRYELFMEAFNHIASNIDKIYKQLTKSNTHPLGGTA 1099
Query: 517 AKLEPPEGCSFLDGLEVKVAFGSVWKQSLSELSGGQRXXXXXXXXXXXXXFKPAPLYILD 576
E FL G++ + + + +LSGG++ +P+P +ILD
Sbjct: 1100 YLNLENEDDPFLHGIKYTTMPPTKRFRDMEQLSGGEK--TVAALALLFSIHRPSPFFILD 1157
Query: 577 EVDAALDLSHTQNIGRMIKAHFPHS-------------QFIVVSLKEGMFNNANVL 619
EVDAALD + + + I++ + Q IV+SLK+ ++ A L
Sbjct: 1158 EVDAALDNLNVAKVAKFIRSKSCQAARDNQDAEDGNGFQSIVISLKDSFYDKAEAL 1213
>AT3G54670.2 | Symbols: TTN8, SMC1, ATSMC1 | Structural maintenance
of chromosomes (SMC) family protein |
chr3:20240428-20243701 FORWARD LENGTH=453
Length = 453
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/366 (19%), Positives = 154/366 (42%), Gaps = 57/366 (15%)
Query: 299 LENQLEAMQTQISNLVSELEEQRSTVVAARNNLDQVQSQLNSVRQKMKECDKEINGIINE 358
+E+ + +++T + + + E++ T V N ++ + ++ +QK +E +KEI +
Sbjct: 75 IESSISSLETDLEGIQKTMSERKETAVKITNEINNWKKEMEECKQKSEEYEKEILDWKKQ 134
Query: 359 QKKLEHRLSESSLERKRMENEVKRM-----------EMEQKDCSVRVDKLIEKHSWIASE 407
+ +++ + + E +++++ E+E V D + E S
Sbjct: 135 ASQATTSITKLNRQIHSKETQIEQLISQKQEITEKCELEHITLPVLSDAMEEDDS----- 189
Query: 408 KQLFGRSGTDYDFSS--------RDPGKAREELE-----KLQAEQSGLEKRV-NKKVMAM 453
G +DFS R P ARE++E K++++ S +E+ N + +
Sbjct: 190 ------DGPQFDFSELGRAYLQERRPS-AREKVEAEFRQKIESKTSEIERTAPNLRALDQ 242
Query: 454 FEKAEDEYNDLMSKKNIIENDKSKIKKVIEELDEKKKETLNVTWTKVNSDFGSIFSTL-- 511
+E +++ + + ++ ++ + +K+ E + + S+ I+ L
Sbjct: 243 YEAIQEKEKQVSQEFEAARKEEKQVADAFNTVKQKRYELFMEAFNHIASNIDKIYKQLTK 302
Query: 512 -----LPGTMAKLEPPEGCSFLDGLEVKVAFGSVWKQSLSELSGGQRXXXXXXXXXXXXX 566
L GT E FL G++ + + + +LSGG++
Sbjct: 303 SNTHPLGGTAYLNLENEDDPFLHGIKYTTMPPTKRFRDMEQLSGGEKTVAALALLFSIHS 362
Query: 567 FKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPHS-------------QFIVVSLKEGMF 613
++P+P +ILDEVDAALD + + + I++ + Q IV+SLK+ +
Sbjct: 363 YRPSPFFILDEVDAALDNLNVAKVAKFIRSKSCQAARDNQDAEDGNGFQSIVISLKDSFY 422
Query: 614 NNANVL 619
+ A L
Sbjct: 423 DKAEAL 428