Miyakogusa Predicted Gene

Lj0g3v0358289.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0358289.1 tr|D7KC86|D7KC86_ARALL Predicted protein
OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_682952
PE,31.95,7e-17,ubiquitin,Ubiquitin; no description,NULL; Hect, E3
ligase catalytic domain,HECT; Ubiquitin-like,NULL,CUFF.24647.1
         (536 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G12570.1 | Symbols: UPL5 | ubiquitin protein ligase 5 | chr4:...   301   9e-82
AT2G35635.1 | Symbols: UBQ7, RUB2 | ubiquitin 7 | chr2:14981044-...    51   2e-06
AT1G31340.1 | Symbols: RUB1, NEDD8, ATRUB1 | related to ubiquiti...    51   2e-06

>AT4G12570.1 | Symbols: UPL5 | ubiquitin protein ligase 5 |
           chr4:7445585-7448819 FORWARD LENGTH=873
          Length = 873

 Score =  301 bits (771), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 193/507 (38%), Positives = 280/507 (55%), Gaps = 24/507 (4%)

Query: 36  LRFFVRSMPISNSFVLHGSEEDSVKSVHERIESRTGIPIREQVLIHQGKQLRWEQNLGEC 95
           L+ FVR M    + V+H  + D+V+ +H+RIE +T IP  EQ +I++GKQL+ E +L   
Sbjct: 95  LQIFVRMMSGGKTIVIHAEKYDTVEKLHQRIEWKTKIPALEQRVIYKGKQLQRENSLTYY 154

Query: 96  GIQNDANLQLVGRLRSGGCSEEVYAVVGQMVSLIRRVCGGELDLSVTPIIEH------VM 149
            I+ DA+LQLV R++S         +   M ++ R   G  L  ++   I        V 
Sbjct: 155 SIEQDASLQLVARMQSTEHPVAWQTIDDIMYTISRMYKGENLQSNINEKIVTFFAMIPVE 214

Query: 150 SIQFMAKLNAFDVLVACKAPEALIKLRLSSFSGNQDIAGSAIALFLESCRYMISKGLHAC 209
           S + +AK    ++      P AL+ L  SS   N+  A S++ LFL +C   + K     
Sbjct: 215 SDESIAKY--LNIFSNSSVPAALVMLYASSLERNKSCAKSSVKLFLSNC-VALPKNQKNY 271

Query: 210 CLGAVVEFCKLFTVLVGGNEPLFMSCLSCLRGTLEG----NGDRDPNRRVVLKGVFDYVC 265
           CL  V+EFCKL    V  ++ L+++C + L   LE     +G  +         +F +  
Sbjct: 272 CLPIVLEFCKLLRK-VCPDQKLYVTCRNTLGSMLETFDNPHGVYNDQYETFGVEIFPFFT 330

Query: 266 ELVGVLLREMDLSTNRPVPFLLTRFQELVDFIIPLRNGIRGLQAWEA--VIDGEVPSLAK 323
           EL G+LL E  L+ N    F    FQ++  F   LR  I    A+    V+  +  +L  
Sbjct: 331 ELTGLLLNE--LAQNSGPSF--CDFQKVSSFWQQLRKVIELKVAFPIPIVLPMQSTALEA 386

Query: 324 EVNHIRFMYMQLLSKMDGSLQAMEDCLANKEEGNRGVAVAGMGWSLHISLLKRLYTISKA 383
           E+ H+  ++  LL+ MD  +  +E  LA+KE GN     +   WS ++S+LK + ++S  
Sbjct: 387 EIRHLHRLFGSLLTTMDLCMCRVESSLADKEVGNSETMSSS--WSQYLSILKIINSMSN- 443

Query: 384 KLYDGAEEMFWGVLIRRRNMVSQLFLWFVKRTDDHRWILEQKSATNFECRRHLAMMLFPH 443
            +Y GA+     +L + +   S L + F KR DDH+WI E K ATNFE RRHLAM+LFP 
Sbjct: 444 -IYQGAKGQLAVMLNKNKVSFSALVVKFAKRGDDHQWIFEYKEATNFEARRHLAMLLFPD 502

Query: 444 VRHVYGMGHEMLIDRSRLLTDSFEYISHASPESLRAGLLMKFQKENATGPGVVREWFLLV 503
           V+  +   HEMLIDRS LL++SFEYI  ASPE+L  GL M+F+ E ATGPGV+REWF LV
Sbjct: 503 VKEDFEEMHEMLIDRSNLLSESFEYIVGASPEALHGGLFMEFKNEEATGPGVLREWFYLV 562

Query: 504 CREIFNPLNGLFVACPNDRKRFLPNPG 530
           C+EIFNP N LF+   +D +RF PNP 
Sbjct: 563 CQEIFNPKNTLFLRSADDFRRFSPNPA 589


>AT2G35635.1 | Symbols: UBQ7, RUB2 | ubiquitin 7 |
           chr2:14981044-14981943 FORWARD LENGTH=154
          Length = 154

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 11/113 (9%)

Query: 36  LRFFVRSMPISNSFVLHGSEEDSVKSVHERIESRTGIPIREQVLIHQGKQLRWEQNLGEC 95
           ++ FV+++    +  L     D++ +V  +I+ + GIP  +Q LI  GKQL   + L + 
Sbjct: 1   MQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 59

Query: 96  GIQNDANLQLVGRLRSGGCSEEVYAVVGQMVSLIRRVCGGELDLSVTPIIEHV 148
            IQ ++ L LV RLR GG   +V  + G+ +         E+D+  T  I+ +
Sbjct: 60  NIQKESTLHLVLRLR-GGTMIKVKTLTGKEI---------EIDIEPTDTIDRI 102


>AT1G31340.1 | Symbols: RUB1, NEDD8, ATRUB1 | related to ubiquitin 1
           | chr1:11218076-11219417 REVERSE LENGTH=156
          Length = 156

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 11/113 (9%)

Query: 36  LRFFVRSMPISNSFVLHGSEEDSVKSVHERIESRTGIPIREQVLIHQGKQLRWEQNLGEC 95
           ++ FV+++    +  L     D++ +V  +I+ + GIP  +Q LI  GKQL   + L + 
Sbjct: 1   MQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 59

Query: 96  GIQNDANLQLVGRLRSGGCSEEVYAVVGQMVSLIRRVCGGELDLSVTPIIEHV 148
            IQ ++ L LV RLR GG   +V  + G+ +         E+D+  T  I+ +
Sbjct: 60  NIQKESTLHLVLRLR-GGTMIKVKTLTGKEI---------EIDIEPTDTIDRI 102