Miyakogusa Predicted Gene

Lj0g3v0358139.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0358139.1 Non Chatacterized Hit- tr|C5WSU0|C5WSU0_SORBI
Putative uncharacterized protein Sb01g042980 OS=Sorghu,54.08,7e-19,
,CUFF.24636.1
         (112 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G61140.1 | Symbols:  | U5 small nuclear ribonucleoprotein hel...   138   6e-34
AT5G61140.2 | Symbols:  | U5 small nuclear ribonucleoprotein hel...   138   7e-34

>AT5G61140.1 | Symbols:  | U5 small nuclear ribonucleoprotein
           helicase | chr5:24589999-24603311 FORWARD LENGTH=2146
          Length = 2146

 Score =  138 bits (348), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 63/103 (61%), Positives = 82/103 (79%)

Query: 1   MLLQIPRFSNSLRDPFDVDQAYLHRKTILHNRKPPRNAARSLDESELARKIVYGWEEASV 60
           ML+Q+PR ++SLR+PFD+DQAYL RKTIL     PR++   LDES+LA++IV+ WE AS+
Sbjct: 72  MLVQLPRLTSSLREPFDIDQAYLRRKTILQTLNKPRSSGNRLDESDLAKRIVHQWEGASL 131

Query: 61  EVHQTSKQFIGAVVDLVDGEIPSEEFHEVALAVYRLFGRPMEE 103
           EV Q  KQFIGAVV+L+D E+PS+EF EVA + YRLF  P+EE
Sbjct: 132 EVRQAYKQFIGAVVELIDREVPSDEFREVAFSAYRLFNNPVEE 174


>AT5G61140.2 | Symbols:  | U5 small nuclear ribonucleoprotein
           helicase | chr5:24589999-24603311 FORWARD LENGTH=2157
          Length = 2157

 Score =  138 bits (348), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 63/103 (61%), Positives = 82/103 (79%)

Query: 1   MLLQIPRFSNSLRDPFDVDQAYLHRKTILHNRKPPRNAARSLDESELARKIVYGWEEASV 60
           ML+Q+PR ++SLR+PFD+DQAYL RKTIL     PR++   LDES+LA++IV+ WE AS+
Sbjct: 72  MLVQLPRLTSSLREPFDIDQAYLRRKTILQTLNKPRSSGNRLDESDLAKRIVHQWEGASL 131

Query: 61  EVHQTSKQFIGAVVDLVDGEIPSEEFHEVALAVYRLFGRPMEE 103
           EV Q  KQFIGAVV+L+D E+PS+EF EVA + YRLF  P+EE
Sbjct: 132 EVRQAYKQFIGAVVELIDREVPSDEFREVAFSAYRLFNNPVEE 174