Miyakogusa Predicted Gene

Lj0g3v0357329.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0357329.1 tr|B9I9G4|B9I9G4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_572587 PE=4
SV=1,44.2,5e-19,seg,NULL,CUFF.24592.1
         (238 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G17120.2 | Symbols:  | unknown protein; BEST Arabidopsis thal...    70   2e-12
AT3G17120.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    70   2e-12

>AT3G17120.2 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G02380.1); Has 35333 Blast hits to 34131
           proteins in 2444 species: Archae - 798; Bacteria -
           22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
           - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
           chr3:5842410-5843246 FORWARD LENGTH=219
          Length = 219

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 55/109 (50%), Gaps = 4/109 (3%)

Query: 107 QGPSLDAADHKLIREISQLAMLKRARVERXXXXXXXXXXXXXXXXXXXXX--XXVFTAIF 164
           +GPSLDAAD KLIREI++LAMLKRAR+ER                         +FTAIF
Sbjct: 84  RGPSLDAADQKLIREIAELAMLKRARIERMRALKKSRAAKAASAASSLGNVLATLFTAIF 143

Query: 165 CIVIIFQXXXXXXXXXXXXXXXPLSTGGAEGDLISVQYQLNPS-SDPNA 212
             V++FQ                +  G A G  +SVQY  NPS S+P+ 
Sbjct: 144 FFVLVFQGLSPRAAGSSGKSHL-VVAGKANGGFVSVQYAGNPSASEPDG 191


>AT3G17120.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G02380.1); Has 67 Blast hits to 67 proteins in
           11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr3:5842410-5843246 FORWARD
           LENGTH=219
          Length = 219

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 55/109 (50%), Gaps = 4/109 (3%)

Query: 107 QGPSLDAADHKLIREISQLAMLKRARVERXXXXXXXXXXXXXXXXXXXXX--XXVFTAIF 164
           +GPSLDAAD KLIREI++LAMLKRAR+ER                         +FTAIF
Sbjct: 84  RGPSLDAADQKLIREIAELAMLKRARIERMRALKKSRAAKAASAASSLGNVLATLFTAIF 143

Query: 165 CIVIIFQXXXXXXXXXXXXXXXPLSTGGAEGDLISVQYQLNPS-SDPNA 212
             V++FQ                +  G A G  +SVQY  NPS S+P+ 
Sbjct: 144 FFVLVFQGLSPRAAGSSGKSHL-VVAGKANGGFVSVQYAGNPSASEPDG 191