Miyakogusa Predicted Gene

Lj0g3v0357159.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0357159.1 Non Chatacterized Hit- tr|I1JA31|I1JA31_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.26807
PE,58.23,0.00000000002,NUCLEOPORIN 50,NULL,CUFF.24586.1
         (193 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G11790.1 | Symbols:  | Pleckstrin homology (PH) domain superf...   147   5e-36

>AT4G11790.1 | Symbols:  | Pleckstrin homology (PH) domain
           superfamily protein | chr4:7090456-7093208 FORWARD
           LENGTH=443
          Length = 443

 Score =  147 bits (370), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 77/159 (48%), Positives = 102/159 (64%), Gaps = 12/159 (7%)

Query: 2   MRGSKRMAVSEPNHSDTTETAAFRNKRVMEGSLFDAHR-AEPSQQPTVSTPPLDMKRAES 60
           MRG KR A+SE N S       F+N + +EG  F   +   P QQ +V++  LD +RAE 
Sbjct: 1   MRGVKRAAISESNDS------PFKNAKPVEGIFFGTQKNVVPMQQSSVTSASLDKQRAEL 54

Query: 61  SQQHVRALNTQFASWIQTQLKNHPDELWEDGVRDYLDHASSIMEKFSDVVSWLKANATKA 120
           +++HVRALN QF SW+Q QLKNHPDELWEDG+ DY+ HAS+I+EKF DVVSWLK N  K 
Sbjct: 55  ARKHVRALNNQFVSWVQLQLKNHPDELWEDGMNDYITHASNILEKFKDVVSWLKENKGKG 114

Query: 121 EILAPDGGTSFAGKKFFPEATNKENKTFGEKTGSTPFST 159
           E L+P+  +  A  K   E  N   K+F   + + PF++
Sbjct: 115 ENLSPE--SRGAENKLVAEVKNTNVKSF---SNNIPFAS 148