Miyakogusa Predicted Gene

Lj0g3v0356789.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0356789.1 tr|A9RSH0|A9RSH0_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_109595,34.18,9e-19,FAM175PLANT,FAM175 family, plant;
seg,NULL,CUFF.24569.1
         (206 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G08780.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    79   3e-15
AT3G08780.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    78   3e-15

>AT3G08780.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: male
           gametophyte, cultured cell; EXPRESSED DURING: L mature
           pollen stage, M germinated pollen stage; Has 35333 Blast
           hits to 34131 proteins in 2444 species: Archae - 798;
           Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants -
           531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
           BLink). | chr3:2666514-2667452 REVERSE LENGTH=312
          Length = 312

 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 40/57 (70%)

Query: 141 TSSHVHTHEYRAYQFRRAALSFDAKSINIVNIGPAFRGHYGSFSPNSPLPALNCSRS 197
           T   +HTHEYRAYQFR +    + +S+ IVNIGPAFRGHYGSFSP S  P L C  S
Sbjct: 160 TDQCIHTHEYRAYQFRSSKQRLEPRSVGIVNIGPAFRGHYGSFSPKSGFPPLICELS 216



 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 25/38 (65%), Positives = 31/38 (81%)

Query: 1  MDDPPLQNIAISGPTLASLIQRFSTAPSAIDGLLFGHV 38
          MDD  L+ I ISGPTLASLIQR S++PS +DGL+FG +
Sbjct: 1  MDDLSLEKIEISGPTLASLIQRASSSPSDVDGLIFGQI 38


>AT3G08780.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: male
           gametophyte, cultured cell; EXPRESSED DURING: L mature
           pollen stage, M germinated pollen stage; Has 129 Blast
           hits to 129 proteins in 38 species: Archae - 0; Bacteria
           - 0; Metazoa - 96; Fungi - 0; Plants - 31; Viruses - 0;
           Other Eukaryotes - 2 (source: NCBI BLink). |
           chr3:2666376-2667452 REVERSE LENGTH=313
          Length = 313

 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 40/57 (70%)

Query: 141 TSSHVHTHEYRAYQFRRAALSFDAKSINIVNIGPAFRGHYGSFSPNSPLPALNCSRS 197
           T   +HTHEYRAYQFR +    + +S+ IVNIGPAFRGHYGSFSP S  P L C  S
Sbjct: 160 TDQCIHTHEYRAYQFRSSKQRLEPRSVGIVNIGPAFRGHYGSFSPKSGFPPLICELS 216



 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 32/41 (78%)

Query: 1  MDDPPLQNIAISGPTLASLIQRFSTAPSAIDGLLFGHVTHV 41
          MDD  L+ I ISGPTLASLIQR S++PS +DGL+FG +  +
Sbjct: 1  MDDLSLEKIEISGPTLASLIQRASSSPSDVDGLIFGQIHRI 41