Miyakogusa Predicted Gene

Lj0g3v0356019.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0356019.2 Non Chatacterized Hit- tr|J3LSI4|J3LSI4_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB03G4,52.53,5e-17,coiled-coil,NULL; seg,NULL,CUFF.24538.2
         (123 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G49975.1 | Symbols:  | INVOLVED IN: photosynthesis; LOCATED I...   109   4e-25

>AT1G49975.1 | Symbols:  | INVOLVED IN: photosynthesis; LOCATED IN:
           photosystem I, chloroplast, thylakoid membrane;
           EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13
           growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I
           reaction centre subunit N (InterPro:IPR008796); Has 34
           Blast hits to 34 proteins in 14 species: Archae - 0;
           Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr1:18504845-18505431 FORWARD LENGTH=129
          Length = 129

 Score =  109 bits (273), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 59/124 (47%), Positives = 75/124 (60%), Gaps = 5/124 (4%)

Query: 1   MALTVTVNKYASSNLQAVHRTQEKAGNQTTPTLSTNGEVGRRGLILSTAIATTQVPESRT 60
           MALTVTVNKYASSN+QAV R   K  + T P      ++GRR ++ S+         S  
Sbjct: 10  MALTVTVNKYASSNVQAVRRNDTKRHSLTAPP----ADLGRRNILFSSTSFIAAALTSSD 65

Query: 61  QLLXXXXXXXXXXXXXXXXXRLDSYYKRNYKDYFELMEGTLKGK-DGELSETEKGIRDWL 119
           QLL                 RLDS+YKRNYKDYFE +EG++KGK + ELSE+EK I +WL
Sbjct: 66  QLLQKYLKKTEENKAKNDKERLDSFYKRNYKDYFEFVEGSIKGKTEAELSESEKRILEWL 125

Query: 120 QSNK 123
           ++NK
Sbjct: 126 KANK 129