Miyakogusa Predicted Gene

Lj0g3v0355919.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0355919.2 Non Chatacterized Hit- tr|F6I3I8|F6I3I8_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,33.97,2e-16,
,CUFF.24496.2
         (287 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G15820.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...   135   3e-32
AT3G61780.1 | Symbols: emb1703 | embryo defective 1703 | chr3:22...    56   3e-08

>AT4G15820.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: embryo defective 1703 (TAIR:AT3G61780.1); Has 524
           Blast hits to 443 proteins in 102 species: Archae - 0;
           Bacteria - 13; Metazoa - 196; Fungi - 37; Plants - 43;
           Viruses - 3; Other Eukaryotes - 232 (source: NCBI
           BLink). | chr4:8992970-8995022 FORWARD LENGTH=460
          Length = 460

 Score =  135 bits (340), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 72/169 (42%), Positives = 104/169 (61%), Gaps = 2/169 (1%)

Query: 116 GNR--GTSPILEKDNVRSVNGSSRHGLAKKKSADNRVKAKQANTKIDMWWLNLRYVLVIL 173
           GNR  GT  +       S + S +HG  +K     R K KQ+  +  +WWL L YVL IL
Sbjct: 290 GNRVGGTPNMKAGSGFGSTSLSEKHGDVRKGKPLRRAKEKQSEKENKLWWLKLPYVLRIL 349

Query: 174 MQRGSNGEGGKGLYSVKFTSKEQGLSDGSYTVAFEDHADANNFCFLLDSFFEDLGDFSAN 233
           M+   + +  +G ++++  S EQ     S+ +AFED +DA NF +LL+S FEDL DFSA+
Sbjct: 350 MRSNIDQDISEGYFTLRTESMEQNEGQVSHMIAFEDQSDARNFSYLLESVFEDLDDFSAD 409

Query: 234 AVPMSIQELSEEIISRAKKVIVVKKRQLQLYAGQLLTDVEMALCSIIEQ 282
             P++ ++L +E+ S  K VIVV+KRQL LYAGQ   DVE AL ++I++
Sbjct: 410 IAPVTTKDLYDEVSSGGKNVIVVRKRQLTLYAGQPFEDVERALRTLIQE 458


>AT3G61780.1 | Symbols: emb1703 | embryo defective 1703 |
            chr3:22867814-22871462 REVERSE LENGTH=1121
          Length = 1121

 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 1/104 (0%)

Query: 161  MWWLNLRYVLVI-LMQRGSNGEGGKGLYSVKFTSKEQGLSDGSYTVAFEDHADANNFCFL 219
            +WWL+L +VL + L     NGE   G Y+++  +  +      + +AFED AD  N C++
Sbjct: 951  LWWLDLPHVLCLELYTVDENGEQQVGFYTLEMATDLELEPKPHHVIAFEDAADCRNLCYI 1010

Query: 220  LDSFFEDLGDFSANAVPMSIQELSEEIISRAKKVIVVKKRQLQL 263
            + +  + L   +   VP   ++   E  +    V V++K +L+L
Sbjct: 1011 IQAHLDMLRSGNVFIVPRPPKDAYREAKANGFGVTVIRKGELKL 1054