Miyakogusa Predicted Gene

Lj0g3v0355919.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0355919.1 Non Chatacterized Hit- tr|A9P102|A9P102_PICSI
Putative uncharacterized protein OS=Picea sitchensis P,43.64,5e-17,
,CUFF.24496.1
         (144 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G15820.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...   103   5e-23

>AT4G15820.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: embryo defective 1703 (TAIR:AT3G61780.1); Has 524
           Blast hits to 443 proteins in 102 species: Archae - 0;
           Bacteria - 13; Metazoa - 196; Fungi - 37; Plants - 43;
           Viruses - 3; Other Eukaryotes - 232 (source: NCBI
           BLink). | chr4:8992970-8995022 FORWARD LENGTH=460
          Length = 460

 Score =  103 bits (256), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 51/111 (45%), Positives = 76/111 (68%)

Query: 29  ILMQRGSNGEGGKGLYSVKFTSKEQGLSDGSYTVAFEDHADANNFCFLLDSFFEDLGDFS 88
           ILM+   + +  +G ++++  S EQ     S+ +AFED +DA NF +LL+S FEDL DFS
Sbjct: 348 ILMRSNIDQDISEGYFTLRTESMEQNEGQVSHMIAFEDQSDARNFSYLLESVFEDLDDFS 407

Query: 89  ANAVPMSIQELSEEIISRAKKVIVVKKRQLQLYAGQLLTDVEMALCSIIEQ 139
           A+  P++ ++L +E+ S  K VIVV+KRQL LYAGQ   DVE AL ++I++
Sbjct: 408 ADIAPVTTKDLYDEVSSGGKNVIVVRKRQLTLYAGQPFEDVERALRTLIQE 458