Miyakogusa Predicted Gene

Lj0g3v0355169.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0355169.1 Non Chatacterized Hit- tr|B9RLT3|B9RLT3_RICCO DNA
binding protein, putative OS=Ricinus communis
GN=R,58.02,2e-16,seg,NULL,CUFF.24464.1
         (149 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G00050.1 | Symbols: UNE10 | basic helix-loop-helix (bHLH) DNA...    79   1e-15

>AT4G00050.1 | Symbols: UNE10 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr4:17863-19848
           FORWARD LENGTH=399
          Length = 399

 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 68/141 (48%), Gaps = 11/141 (7%)

Query: 1   MLDEVIEYLKQLQAQVQMINRFNX-XXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXX 59
           MLDEVIEYLKQLQAQV M++R N                                     
Sbjct: 251 MLDEVIEYLKQLQAQVSMMSRMNMPSMMLPMAMQQQQQLQMSLMSNPMGLGMGMGMPGLG 310

Query: 60  XXXXNTMNRA--NMPGMPPVLHPSAFMPMA--SWDAATAATGGDRLQGPPATMMPDPMST 115
               N+MNRA  + P +   + P+ F+PM   SWDA++      R Q P   ++PDPMS 
Sbjct: 311 LLDLNSMNRAAASAPNIHANMMPNPFLPMNCPSWDASS---NDSRFQSP---LIPDPMSA 364

Query: 116 FFGCQSQPMNMEAYSRLAAMY 136
           F  C +QP  MEAYSR+A +Y
Sbjct: 365 FLACSTQPTTMEAYSRMATLY 385