Miyakogusa Predicted Gene

Lj0g3v0355159.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0355159.1 tr|F6J9S0|F6J9S0_DROME CG2446 (Fragment)
OS=Drosophila melanogaster GN=CG2446 PE=4 SV=1,41.32,1e-18,seg,NULL;
SUBFAMILY NOT NAMED,NULL; UNCHARACTERIZED,NULL,CUFF.24461.1
         (220 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12210.2 | Symbols:  | DNA binding | chr3:3894843-3895879 FOR...   268   3e-72
AT3G12210.1 | Symbols:  | DNA binding | chr3:3894843-3895498 FOR...   195   2e-50

>AT3G12210.2 | Symbols:  | DNA binding | chr3:3894843-3895879
           FORWARD LENGTH=209
          Length = 209

 Score =  268 bits (684), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 138/194 (71%), Positives = 165/194 (85%), Gaps = 4/194 (2%)

Query: 1   MDFGCSEVSVWQEALSAYPSRIQSLSLHKNKPDLVSLDEFYRNELPSLLHQRNPNPFITT 60
           ++F CS+V VW+EALS+Y SRI+SL    NKP+LVSLD+FYR +LP LLH R+PNP++TT
Sbjct: 3   LEFKCSDVGVWKEALSSYDSRIESL----NKPELVSLDQFYRIKLPCLLHDRDPNPYLTT 58

Query: 61  LELSKLMQWKLTRGKSRPRLLNFVSSLDDAVVKSASEKAFQCLPDVSKAVTELSALKGVG 120
            ELS+LM+WKL+RGK RPRLL+FVSSLDD+VVKSASEKAF+ LPD+SKAV EL+ LKGVG
Sbjct: 59  SELSQLMKWKLSRGKWRPRLLDFVSSLDDSVVKSASEKAFKSLPDISKAVKELTVLKGVG 118

Query: 121 PATASAVLAAFTPELAPFMSDEAMEAALGNSKYYTLKQYLIFVNKLQTKAKELSSEGASF 180
            ATASAVLAA+ P++APFMSDEAME ALGNSK Y+LKQYL+F  KLQ KAKEL  +G   
Sbjct: 119 AATASAVLAAYAPDIAPFMSDEAMEVALGNSKDYSLKQYLLFATKLQDKAKELKLKGEWD 178

Query: 181 TPSDVERALWSCAV 194
            PSD+ERALWSC V
Sbjct: 179 GPSDIERALWSCTV 192


>AT3G12210.1 | Symbols:  | DNA binding | chr3:3894843-3895498
           FORWARD LENGTH=155
          Length = 155

 Score =  195 bits (495), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 102/142 (71%), Positives = 125/142 (88%), Gaps = 4/142 (2%)

Query: 1   MDFGCSEVSVWQEALSAYPSRIQSLSLHKNKPDLVSLDEFYRNELPSLLHQRNPNPFITT 60
           ++F CS+V VW+EALS+Y SRI+SL    NKP+LVSLD+FYR +LP LLH R+PNP++TT
Sbjct: 3   LEFKCSDVGVWKEALSSYDSRIESL----NKPELVSLDQFYRIKLPCLLHDRDPNPYLTT 58

Query: 61  LELSKLMQWKLTRGKSRPRLLNFVSSLDDAVVKSASEKAFQCLPDVSKAVTELSALKGVG 120
            ELS+LM+WKL+RGK RPRLL+FVSSLDD+VVKSASEKAF+ LPD+SKAV EL+ LKGVG
Sbjct: 59  SELSQLMKWKLSRGKWRPRLLDFVSSLDDSVVKSASEKAFKSLPDISKAVKELTVLKGVG 118

Query: 121 PATASAVLAAFTPELAPFMSDE 142
            ATASAVLAA+ P++APFMSDE
Sbjct: 119 AATASAVLAAYAPDIAPFMSDE 140