Miyakogusa Predicted Gene
- Lj0g3v0354659.4
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0354659.4 tr|G7IWF0|G7IWF0_MEDTR Activating signal
cointegrator 1 complex subunit OS=Medicago truncatula
GN=MT,88.41,0,DEAD-like helicases superfamily,Helicase, superfamily
1/2, ATP-binding domain; helicase superfamily ,CUFF.24499.4
(497 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G61140.1 | Symbols: | U5 small nuclear ribonucleoprotein hel... 896 0.0
AT5G61140.2 | Symbols: | U5 small nuclear ribonucleoprotein hel... 895 0.0
AT2G42270.1 | Symbols: | U5 small nuclear ribonucleoprotein hel... 553 e-157
AT1G20960.2 | Symbols: emb1507 | U5 small nuclear ribonucleoprot... 550 e-157
AT1G20960.1 | Symbols: emb1507 | U5 small nuclear ribonucleoprot... 550 e-157
AT3G27730.1 | Symbols: RCK, MER3 | ATP binding;ATP-dependent hel... 248 7e-66
AT4G32700.2 | Symbols: | helicases;ATP-dependent helicases;nucl... 104 1e-22
AT1G59760.1 | Symbols: | RNA helicase, ATP-dependent, SK12/DOB1... 96 7e-20
AT3G46960.1 | Symbols: | RNA helicase, ATP-dependent, SK12/DOB1... 73 6e-13
AT2G06990.1 | Symbols: HEN2 | RNA helicase, ATP-dependent, SK12/... 72 1e-12
AT1G70070.1 | Symbols: EMB25, PDE317, ISE2 | DEAD/DEAH box helic... 71 2e-12
>AT5G61140.1 | Symbols: | U5 small nuclear ribonucleoprotein helicase
| chr5:24589999-24603311 FORWARD LENGTH=2146
Length = 2146
Score = 896 bits (2316), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/493 (84%), Positives = 469/493 (95%)
Query: 5 QIGQHFKDGYLHKDEFKIVYVAPMKALAAEVTRTFSQRLSPLNMTVRELTGDMQLSKNEL 64
+I QHF+DGYLHK+EFKIVYVAPMKALAAEVT FS+RL+PLNM V+ELTGDMQL+K EL
Sbjct: 547 EIKQHFRDGYLHKNEFKIVYVAPMKALAAEVTSAFSRRLAPLNMVVKELTGDMQLTKTEL 606
Query: 65 EETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVE 124
EETQMIVTTPEKWDVITRKSSDMS+SMLVKLLIIDEVHLLNDDRG VIEALVARTLRQVE
Sbjct: 607 EETQMIVTTPEKWDVITRKSSDMSMSMLVKLLIIDEVHLLNDDRGAVIEALVARTLRQVE 666
Query: 125 SSQTMIRIVGLSATLPNYLEVAQFLRVNPDAGLFFFDSTYRPVPLAQQYIGISEQNFAAR 184
S+QTMIRIVGLSATLP+YL+VAQFLRVN D GLF+FDS+YRPVPLAQQYIGI+E NFAAR
Sbjct: 667 STQTMIRIVGLSATLPSYLQVAQFLRVNTDTGLFYFDSSYRPVPLAQQYIGITEHNFAAR 726
Query: 185 NELLNDICYKKVVESIRQGYQAMVFVHSRKDTAKTAQKLVELVQKHEELELFSNNTHAQY 244
NELLN+ICYKKVV+SI+QG+QAM+FVHSRKDT+KTA+KLV+L +++E L+LF+N TH Q+
Sbjct: 727 NELLNEICYKKVVDSIKQGHQAMIFVHSRKDTSKTAEKLVDLARQYETLDLFTNETHPQF 786
Query: 245 SLMKREVVKSRNRDVVDLFEFGMGIHHAGMLRADRGLTERLFSDGLLKVLVCTATLAWGV 304
LMK++V+KSRN+D+V FE G GIHHAGMLR+DR LTERLFSDGLLKVLVCTATLAWGV
Sbjct: 787 QLMKKDVMKSRNKDLVKFFEAGFGIHHAGMLRSDRTLTERLFSDGLLKVLVCTATLAWGV 846
Query: 305 NLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHEKLAYY 364
NLPAHTVVIKGTQLYD KAGGW+DLGMLDVMQIFGRAGRPQFDKSGEGIIITSH+KLAYY
Sbjct: 847 NLPAHTVVIKGTQLYDAKAGGWKDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYY 906
Query: 365 LRLLTSQLPIESQFITSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRMNPLAYGIG 424
LRLLTSQLPIESQFI+SLKDNLNAEV LGTVTNVKEACAWLGYTYL IRM++NPLAYGIG
Sbjct: 907 LRLLTSQLPIESQFISSLKDNLNAEVVLGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIG 966
Query: 425 WDEVMADPNLSSKQRSLVIDAARALDKAKMMRFDEKSGSFYCTELGRIASHFYIQFSSVQ 484
W+E++ADP+LS KQR+LV DAAR+LDKAKMMRFDEKSG+FYCTELGR+ASHFYIQ+SSV+
Sbjct: 967 WEEIIADPSLSLKQRALVADAARSLDKAKMMRFDEKSGNFYCTELGRVASHFYIQYSSVE 1026
Query: 485 TYNEMLRRHMNDS 497
TYNEML+RHMN+S
Sbjct: 1027 TYNEMLKRHMNES 1039
Score = 286 bits (732), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 162/469 (34%), Positives = 255/469 (54%), Gaps = 11/469 (2%)
Query: 19 EFKIVYVAPMKALAAEVTRTFSQRL-SPLNMTVRELTGDMQLSKNELEETQMIVTTPEKW 77
+ K+VY+AP+KA+ E + + L +PL + E+TGD L +I++TPEKW
Sbjct: 1390 DMKVVYIAPLKAIVRERMNDWKKHLVAPLGKEMVEMTGDYTPDLVALLSADIIISTPEKW 1449
Query: 78 DVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVESSQTMIRIVGLSA 137
D I+R S V L+I+DE+HLL DRGP++E +V+R ++ +R VGLS
Sbjct: 1450 DGISRNWHTRSYVKKVGLVILDEIHLLGADRGPILEVIVSRMRYISSQTERSVRFVGLST 1509
Query: 138 TLPNYLEVAQFLRVNPDAGLFFFDSTYRPVPLAQQYIGISEQNFAARNELLNDICYKKVV 197
L N ++A +L V + GLF F + RPVP+ G + + R +N Y +
Sbjct: 1510 ALANAGDLADWLGVG-EIGLFNFKPSVRPVPIEVHIQGYPGKYYCPRMNSMNKPAYAAIC 1568
Query: 198 ESIRQGYQAMVFVHSRKDTAKTAQKLVELVQKHEELELFSNNTHAQYSLMKREVVKSRNR 257
+ ++FV SR+ T TA L++ E F + + ++ ++ R
Sbjct: 1569 -THSPTKPVLIFVSSRRQTRLTALDLIQFAASDEHPRQFLSVSEEDLQMVLSQITDQNLR 1627
Query: 258 DVVDLFEFGMGIHHAGMLRADRGLTERLFSDGLLKVLVCTATLAWGVNLPAHTVVIKGTQ 317
+ +FG+G+HHAG+ DR E LF++ ++VLV T+TLAWGVNLPAH V+IKGT+
Sbjct: 1628 HTL---QFGIGLHHAGLNDHDRSAVEELFTNNKIQVLVSTSTLAWGVNLPAHLVIIKGTE 1684
Query: 318 LYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHEKLAYYLRLLTSQLPIESQ 377
+D K + D + +++Q+ GRAGRPQFD+ G+ +I+ K ++Y + L P+ES
Sbjct: 1685 YFDGKTKRYVDFPLTEILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKKFLYEPFPVESS 1744
Query: 378 FITSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRMNPLAYGIGWDEVMADPNLSSK 437
L D+ NAE+ GT+ N ++A +L +TYLF R+ NP YG+ E D + S
Sbjct: 1745 LKEKLHDHFNAEIVSGTIGNKEDAVHYLTWTYLFRRLMANPAYYGL---EGTQDETICSY 1801
Query: 438 QRSLVIDAARALDKAKMMRFDEKSGSFYCTELGRIASHFYIQFSSVQTY 486
LV L+ + ++ +E S T LG IAS +Y+ + +V +
Sbjct: 1802 LSRLVQTTFEDLEDSGCLKVNED--SVEPTMLGTIASQYYLCYMTVSMF 1848
>AT5G61140.2 | Symbols: | U5 small nuclear ribonucleoprotein helicase
| chr5:24589999-24603311 FORWARD LENGTH=2157
Length = 2157
Score = 895 bits (2314), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/493 (84%), Positives = 469/493 (95%)
Query: 5 QIGQHFKDGYLHKDEFKIVYVAPMKALAAEVTRTFSQRLSPLNMTVRELTGDMQLSKNEL 64
+I QHF+DGYLHK+EFKIVYVAPMKALAAEVT FS+RL+PLNM V+ELTGDMQL+K EL
Sbjct: 547 EIKQHFRDGYLHKNEFKIVYVAPMKALAAEVTSAFSRRLAPLNMVVKELTGDMQLTKTEL 606
Query: 65 EETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVE 124
EETQMIVTTPEKWDVITRKSSDMS+SMLVKLLIIDEVHLLNDDRG VIEALVARTLRQVE
Sbjct: 607 EETQMIVTTPEKWDVITRKSSDMSMSMLVKLLIIDEVHLLNDDRGAVIEALVARTLRQVE 666
Query: 125 SSQTMIRIVGLSATLPNYLEVAQFLRVNPDAGLFFFDSTYRPVPLAQQYIGISEQNFAAR 184
S+QTMIRIVGLSATLP+YL+VAQFLRVN D GLF+FDS+YRPVPLAQQYIGI+E NFAAR
Sbjct: 667 STQTMIRIVGLSATLPSYLQVAQFLRVNTDTGLFYFDSSYRPVPLAQQYIGITEHNFAAR 726
Query: 185 NELLNDICYKKVVESIRQGYQAMVFVHSRKDTAKTAQKLVELVQKHEELELFSNNTHAQY 244
NELLN+ICYKKVV+SI+QG+QAM+FVHSRKDT+KTA+KLV+L +++E L+LF+N TH Q+
Sbjct: 727 NELLNEICYKKVVDSIKQGHQAMIFVHSRKDTSKTAEKLVDLARQYETLDLFTNETHPQF 786
Query: 245 SLMKREVVKSRNRDVVDLFEFGMGIHHAGMLRADRGLTERLFSDGLLKVLVCTATLAWGV 304
LMK++V+KSRN+D+V FE G GIHHAGMLR+DR LTERLFSDGLLKVLVCTATLAWGV
Sbjct: 787 QLMKKDVMKSRNKDLVKFFEAGFGIHHAGMLRSDRTLTERLFSDGLLKVLVCTATLAWGV 846
Query: 305 NLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHEKLAYY 364
NLPAHTVVIKGTQLYD KAGGW+DLGMLDVMQIFGRAGRPQFDKSGEGIIITSH+KLAYY
Sbjct: 847 NLPAHTVVIKGTQLYDAKAGGWKDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYY 906
Query: 365 LRLLTSQLPIESQFITSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRMNPLAYGIG 424
LRLLTSQLPIESQFI+SLKDNLNAEV LGTVTNVKEACAWLGYTYL IRM++NPLAYGIG
Sbjct: 907 LRLLTSQLPIESQFISSLKDNLNAEVVLGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIG 966
Query: 425 WDEVMADPNLSSKQRSLVIDAARALDKAKMMRFDEKSGSFYCTELGRIASHFYIQFSSVQ 484
W+E++ADP+LS KQR+LV DAAR+LDKAKMMRFDEKSG+FYCTELGR+ASHFYIQ+SSV+
Sbjct: 967 WEEIIADPSLSLKQRALVADAARSLDKAKMMRFDEKSGNFYCTELGRVASHFYIQYSSVE 1026
Query: 485 TYNEMLRRHMNDS 497
TYNEML+RHMN+S
Sbjct: 1027 TYNEMLKRHMNES 1039
Score = 285 bits (730), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 162/469 (34%), Positives = 255/469 (54%), Gaps = 11/469 (2%)
Query: 19 EFKIVYVAPMKALAAEVTRTFSQRL-SPLNMTVRELTGDMQLSKNELEETQMIVTTPEKW 77
+ K+VY+AP+KA+ E + + L +PL + E+TGD L +I++TPEKW
Sbjct: 1401 DMKVVYIAPLKAIVRERMNDWKKHLVAPLGKEMVEMTGDYTPDLVALLSADIIISTPEKW 1460
Query: 78 DVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVESSQTMIRIVGLSA 137
D I+R S V L+I+DE+HLL DRGP++E +V+R ++ +R VGLS
Sbjct: 1461 DGISRNWHTRSYVKKVGLVILDEIHLLGADRGPILEVIVSRMRYISSQTERSVRFVGLST 1520
Query: 138 TLPNYLEVAQFLRVNPDAGLFFFDSTYRPVPLAQQYIGISEQNFAARNELLNDICYKKVV 197
L N ++A +L V + GLF F + RPVP+ G + + R +N Y +
Sbjct: 1521 ALANAGDLADWLGVG-EIGLFNFKPSVRPVPIEVHIQGYPGKYYCPRMNSMNKPAYAAIC 1579
Query: 198 ESIRQGYQAMVFVHSRKDTAKTAQKLVELVQKHEELELFSNNTHAQYSLMKREVVKSRNR 257
+ ++FV SR+ T TA L++ E F + + ++ ++ R
Sbjct: 1580 -THSPTKPVLIFVSSRRQTRLTALDLIQFAASDEHPRQFLSVSEEDLQMVLSQITDQNLR 1638
Query: 258 DVVDLFEFGMGIHHAGMLRADRGLTERLFSDGLLKVLVCTATLAWGVNLPAHTVVIKGTQ 317
+ +FG+G+HHAG+ DR E LF++ ++VLV T+TLAWGVNLPAH V+IKGT+
Sbjct: 1639 HTL---QFGIGLHHAGLNDHDRSAVEELFTNNKIQVLVSTSTLAWGVNLPAHLVIIKGTE 1695
Query: 318 LYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHEKLAYYLRLLTSQLPIESQ 377
+D K + D + +++Q+ GRAGRPQFD+ G+ +I+ K ++Y + L P+ES
Sbjct: 1696 YFDGKTKRYVDFPLTEILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKKFLYEPFPVESS 1755
Query: 378 FITSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRMNPLAYGIGWDEVMADPNLSSK 437
L D+ NAE+ GT+ N ++A +L +TYLF R+ NP YG+ E D + S
Sbjct: 1756 LKEKLHDHFNAEIVSGTIGNKEDAVHYLTWTYLFRRLMANPAYYGL---EGTQDETICSY 1812
Query: 438 QRSLVIDAARALDKAKMMRFDEKSGSFYCTELGRIASHFYIQFSSVQTY 486
LV L+ + ++ +E S T LG IAS +Y+ + +V +
Sbjct: 1813 LSRLVQTTFEDLEDSGCLKVNED--SVEPTMLGTIASQYYLCYMTVSMF 1859
>AT2G42270.1 | Symbols: | U5 small nuclear ribonucleoprotein helicase
| chr2:17604330-17610848 FORWARD LENGTH=2172
Length = 2172
Score = 553 bits (1424), Expect = e-157, Method: Compositional matrix adjust.
Identities = 265/484 (54%), Positives = 349/484 (72%), Gaps = 1/484 (0%)
Query: 13 GYLHKDEFKIVYVAPMKALAAEVTRTFSQRLSPLNMTVRELTGDMQLSKNELEETQMIVT 72
G + +KIVYVAPMKAL AEV + SQRL +TV+EL+GD L+ E++ETQ+IVT
Sbjct: 554 GTFNHGNYKIVYVAPMKALVAEVVDSLSQRLKDFGVTVKELSGDQSLTGQEIKETQIIVT 613
Query: 73 TPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVESSQTMIRI 132
TPEKWD+ITRKS D + + LV+LLIIDE+HLL+D+RGPV+E++VARTLRQ+ES++ IR+
Sbjct: 614 TPEKWDIITRKSGDRTYTQLVRLLIIDEIHLLDDNRGPVLESIVARTLRQIESTKEHIRL 673
Query: 133 VGLSATLPNYLEVAQFLRVNPDAGLFFFDSTYRPVPLAQQYIGISEQNFAARNELLNDIC 192
VGLSATLPN +VA FLRV+ GLF FD +YRPVPL QQYIGI+ + R +L+NDIC
Sbjct: 674 VGLSATLPNCDDVASFLRVDLKNGLFIFDRSYRPVPLGQQYIGINVKKPLRRFQLMNDIC 733
Query: 193 YKKVVESIRQGYQAMVFVHSRKDTAKTAQKLVELVQKHEELELFSNNTHAQYSLMKREVV 252
Y+KVV ++ +Q ++FVHSRK+TAKTA+ + + ++ L F ++K
Sbjct: 734 YQKVV-AVAGKHQVLIFVHSRKETAKTARAIRDTAMANDTLSRFLKEDSQSREILKCLAG 792
Query: 253 KSRNRDVVDLFEFGMGIHHAGMLRADRGLTERLFSDGLLKVLVCTATLAWGVNLPAHTVV 312
+N D+ +L +G IHHAG+ R DR + E F G L+VL+ TATLAWGVNLPAHTV+
Sbjct: 793 LLKNNDLKELLPYGFAIHHAGLTRTDREIVENQFRWGNLQVLISTATLAWGVNLPAHTVI 852
Query: 313 IKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHEKLAYYLRLLTSQL 372
IKGTQ+Y+P+ G W +L LDVMQ+ GRAGRPQ+D+ GEGIIIT + KL YYLRL+ QL
Sbjct: 853 IKGTQVYNPERGEWMELSPLDVMQMIGRAGRPQYDQQGEGIIITGYSKLQYYLRLMNEQL 912
Query: 373 PIESQFITSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRMNPLAYGIGWDEVMADP 432
PIESQFI+ L D LNAE+ LGT+ N +EAC WLGYTYL++RM NP YG+ D + D
Sbjct: 913 PIESQFISKLADQLNAEIVLGTIQNAREACHWLGYTYLYVRMVRNPTLYGVSPDALAKDL 972
Query: 433 NLSSKQRSLVIDAARALDKAKMMRFDEKSGSFYCTELGRIASHFYIQFSSVQTYNEMLRR 492
L ++ L+ AA LDK ++++D KSG F T+LGRIAS++YI ++ YNE L+
Sbjct: 973 LLEERRADLIHSAATILDKNNLIKYDRKSGHFQVTDLGRIASYYYISHGTIAAYNENLKP 1032
Query: 493 HMND 496
MND
Sbjct: 1033 TMND 1036
Score = 227 bits (579), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 144/485 (29%), Positives = 246/485 (50%), Gaps = 34/485 (7%)
Query: 20 FKIVYVAPMKALAAEVTRTFSQRLSP-LNMTVRELTGDMQLSKNELEETQMIVTTPEKWD 78
++VY+AP++A+A E R + ++ L + V ELTG+ L LE+ Q+I++TPEKWD
Sbjct: 1400 MRVVYIAPLEAIAKEQFRDWEKKFGKGLGLRVVELTGETLLDLKLLEKGQIIISTPEKWD 1459
Query: 79 VITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVESS-QTMIRIVGLSA 137
++R+ V L I+DE+HL+ G V+E +V+R +R + S IRIV LS
Sbjct: 1460 ALSRRWKQRKYIQQVSLFIVDELHLIGGQGGQVLEVIVSR-MRYISSQVGNKIRIVALST 1518
Query: 138 TLPNYLEVAQFLRVNPDAGLFFFDSTYRPVPLAQQYIGISEQNFAARNELLNDICYKKVV 197
+L N ++ +++ + G+F F RPVPL G+ +F AR + + Y +V
Sbjct: 1519 SLANAKDLGEWIGAS-SCGVFNFPPNVRPVPLEIHIHGVDILSFEARMQAMTKPTYTAIV 1577
Query: 198 ESIRQGYQAMVFVHSRKDTAKTAQKLVE------------LVQKHEELELFSNNTHAQYS 245
+ + A+VFV +RK TA L+ L+ EELE F
Sbjct: 1578 QHAKNKKPAIVFVPTRKHVRLTAVDLIAYSHMDNMKSPDFLLGNLEELEPF--------- 1628
Query: 246 LMKREVVKSRNRDVVDLFEFGMGIHHAGMLRADRGLTERLFSDGLLKVLVCTATLAWGVN 305
+++ + + G+G H G+ D+ + +LF G ++V V +++L WG
Sbjct: 1629 -----LIQICEETLKETLRHGIGYLHEGLSNLDQEIVTQLFEAGRIQVCVMSSSLCWGTP 1683
Query: 306 LPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHEKLAYYL 365
L AH VV+ GT YD + D + +++Q+ GR RP D +G+ +I + YY
Sbjct: 1684 LKAHLVVVMGTHFYDGRENSHSDYPISNLLQMMGRGSRPLLDDAGKCVIFCHAPRKEYYK 1743
Query: 366 RLLTSQLPIESQFITSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRMNPLAYGIGW 425
+ L LP+ES L DN NAEV + N ++A +L +++++ R+ NP Y +
Sbjct: 1744 KFLYEALPVESHLQHFLHDNFNAEVVARVIENKQDAVDYLTWSFMYRRLPQNPNYYNLLG 1803
Query: 426 DEVMADPNLSSKQRSLVIDAARALDKAKMMRFDEKSGSFYCTELGRIASHFYIQFSSVQT 485
++ +LS LV + L+ +K + D + LG IAS++YI +++++
Sbjct: 1804 ---VSHRHLSDHLSELVENTLSDLEVSKCIEIDNEL-DLSPLNLGMIASYYYINYTTIER 1859
Query: 486 YNEML 490
++ +L
Sbjct: 1860 FSSLL 1864
>AT1G20960.2 | Symbols: emb1507 | U5 small nuclear ribonucleoprotein
helicase, putative | chr1:7302591-7309914 REVERSE
LENGTH=2171
Length = 2171
Score = 550 bits (1417), Expect = e-157, Method: Compositional matrix adjust.
Identities = 265/485 (54%), Positives = 348/485 (71%), Gaps = 1/485 (0%)
Query: 12 DGYLHKDEFKIVYVAPMKALAAEVTRTFSQRLSPLNMTVRELTGDMQLSKNELEETQMIV 71
DG + ++KIVYVAPMKAL AEV S RL + VREL+GD L+ E+EETQ+IV
Sbjct: 552 DGTYNHGDYKIVYVAPMKALVAEVVGNLSNRLKDYGVIVRELSGDQSLTGREIEETQIIV 611
Query: 72 TTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVESSQTMIR 131
TTPEKWD+ITRKS D + + LV+LLIIDE+HLL+D+RGPV+E++VARTLRQ+E+++ IR
Sbjct: 612 TTPEKWDIITRKSGDRTYTQLVRLLIIDEIHLLHDNRGPVLESIVARTLRQIETTKENIR 671
Query: 132 IVGLSATLPNYLEVAQFLRVNPDAGLFFFDSTYRPVPLAQQYIGISEQNFAARNELLNDI 191
+VGLSATLPNY +VA FLRV+ GLF FD +YRPVPL QQYIGIS + R +L+ND+
Sbjct: 672 LVGLSATLPNYEDVALFLRVDLKKGLFKFDRSYRPVPLHQQYIGISVKKPLQRFQLMNDL 731
Query: 192 CYKKVVESIRQGYQAMVFVHSRKDTAKTAQKLVELVQKHEELELFSNNTHAQYSLMKREV 251
CY+KV+ + +Q ++FVHSRK+T+KTA+ + + ++ L F ++
Sbjct: 732 CYQKVLAGAGK-HQVLIFVHSRKETSKTARAIRDTAMANDTLSRFLKEDSVTRDVLHSHE 790
Query: 252 VKSRNRDVVDLFEFGMGIHHAGMLRADRGLTERLFSDGLLKVLVCTATLAWGVNLPAHTV 311
+N D+ D+ +G IHHAG+ R DR + E LFS G ++VLV TATLAWGVNLPAHTV
Sbjct: 791 DIVKNSDLKDILPYGFAIHHAGLSRGDREIVETLFSQGHVQVLVSTATLAWGVNLPAHTV 850
Query: 312 VIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHEKLAYYLRLLTSQ 371
+IKGTQ+Y+P+ G W +L LDVMQ+ GRAGRPQ+D+ GEGIIIT + +L YYL L+ Q
Sbjct: 851 IIKGTQVYNPEKGAWMELSPLDVMQMLGRAGRPQYDQHGEGIIITGYSELQYYLSLMNEQ 910
Query: 372 LPIESQFITSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRMNPLAYGIGWDEVMAD 431
LPIESQFI+ L D LNAE+ LGTV N +EAC WLGYTYL+IRM NP YG+ D + D
Sbjct: 911 LPIESQFISKLADQLNAEIVLGTVQNAREACHWLGYTYLYIRMVRNPTLYGLAPDALAKD 970
Query: 432 PNLSSKQRSLVIDAARALDKAKMMRFDEKSGSFYCTELGRIASHFYIQFSSVQTYNEMLR 491
L ++ L+ AA LDK ++++D KSG F T+LGRIAS++YI ++ TYNE L+
Sbjct: 971 VVLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYYYITHGTIATYNEHLK 1030
Query: 492 RHMND 496
M D
Sbjct: 1031 PTMGD 1035
Score = 245 bits (626), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 154/486 (31%), Positives = 255/486 (52%), Gaps = 36/486 (7%)
Query: 20 FKIVYVAPMKALAAEVTRTFSQRLSP-LNMTVRELTGDMQLSKNELEETQMIVTTPEKWD 78
++VY+AP++A+A E R + + L + V ELTG+ L LE+ Q+I++TPEKWD
Sbjct: 1399 MRVVYIAPLEAIAKEQFRIWEGKFGKGLGLRVVELTGETALDLKLLEKGQIIISTPEKWD 1458
Query: 79 VITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVESSQTM--IRIVGLS 136
++R+ V L I+DE+HL+ GPV+E +V+R +R + SSQ + IRIV LS
Sbjct: 1459 ALSRRWKQRKYVQQVSLFIVDELHLIGGQHGPVLEVIVSR-MRYI-SSQVINKIRIVALS 1516
Query: 137 ATLPNYLEVAQFLRVNPDAGLFFFDSTYRPVPLAQQYIGISEQNFAARNELLNDICYKKV 196
+L N ++ +++ + GLF F RPVPL G+ +F AR + + Y +
Sbjct: 1517 TSLANAKDLGEWIGAS-SHGLFNFPPGVRPVPLEIHIQGVDISSFEARMQAMTKPTYTAI 1575
Query: 197 VESIRQGYQAMVFVHSRKDTAKTAQKLVE------------LVQKHEELELFSNNTHAQY 244
V+ + A+VFV +RK TA L+ L+ K EEL+ F
Sbjct: 1576 VQHAKNKKPAIVFVPTRKHVRLTAVDLMAYSHMDNPQSPDFLLGKLEELDPF-------- 1627
Query: 245 SLMKREVVKSRNRDVVDLFEFGMGIHHAGMLRADRGLTERLFSDGLLKVLVCTATLAWGV 304
V + R + + G+G H G+ D+ + +LF G ++V V +++L WG
Sbjct: 1628 ------VEQIREETLKETLCHGIGYLHEGLSSLDQEIVTQLFEAGRIQVCVMSSSLCWGT 1681
Query: 305 NLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHEKLAYY 364
L AH VV+ GTQ YD + D + D++Q+ GRA RP D +G+ +I + YY
Sbjct: 1682 PLTAHLVVVMGTQYYDGRENSHSDYPVPDLLQMMGRASRPLLDNAGKCVIFCHAPRKEYY 1741
Query: 365 LRLLTSQLPIESQFITSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRMNPLAYGIG 424
+ L P+ESQ L DN NAEV G + N ++A +L +T+++ R+ NP Y +
Sbjct: 1742 KKFLYEAFPVESQLQHFLHDNFNAEVVAGVIENKQDAVDYLTWTFMYRRLPQNPNYYNL- 1800
Query: 425 WDEVMADPNLSSKQRSLVIDAARALDKAKMMRFDEKSGSFYCTELGRIASHFYIQFSSVQ 484
+ ++ +LS LV + L+ +K + +++ LG IAS++YI +++++
Sbjct: 1801 --QGVSHRHLSDHLSELVENTLSDLEASKCIEVEDEM-ELSPLNLGMIASYYYISYTTIE 1857
Query: 485 TYNEML 490
++ +L
Sbjct: 1858 RFSSLL 1863
>AT1G20960.1 | Symbols: emb1507 | U5 small nuclear ribonucleoprotein
helicase, putative | chr1:7302591-7309914 REVERSE
LENGTH=2171
Length = 2171
Score = 550 bits (1417), Expect = e-157, Method: Compositional matrix adjust.
Identities = 265/485 (54%), Positives = 348/485 (71%), Gaps = 1/485 (0%)
Query: 12 DGYLHKDEFKIVYVAPMKALAAEVTRTFSQRLSPLNMTVRELTGDMQLSKNELEETQMIV 71
DG + ++KIVYVAPMKAL AEV S RL + VREL+GD L+ E+EETQ+IV
Sbjct: 552 DGTYNHGDYKIVYVAPMKALVAEVVGNLSNRLKDYGVIVRELSGDQSLTGREIEETQIIV 611
Query: 72 TTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVESSQTMIR 131
TTPEKWD+ITRKS D + + LV+LLIIDE+HLL+D+RGPV+E++VARTLRQ+E+++ IR
Sbjct: 612 TTPEKWDIITRKSGDRTYTQLVRLLIIDEIHLLHDNRGPVLESIVARTLRQIETTKENIR 671
Query: 132 IVGLSATLPNYLEVAQFLRVNPDAGLFFFDSTYRPVPLAQQYIGISEQNFAARNELLNDI 191
+VGLSATLPNY +VA FLRV+ GLF FD +YRPVPL QQYIGIS + R +L+ND+
Sbjct: 672 LVGLSATLPNYEDVALFLRVDLKKGLFKFDRSYRPVPLHQQYIGISVKKPLQRFQLMNDL 731
Query: 192 CYKKVVESIRQGYQAMVFVHSRKDTAKTAQKLVELVQKHEELELFSNNTHAQYSLMKREV 251
CY+KV+ + +Q ++FVHSRK+T+KTA+ + + ++ L F ++
Sbjct: 732 CYQKVLAGAGK-HQVLIFVHSRKETSKTARAIRDTAMANDTLSRFLKEDSVTRDVLHSHE 790
Query: 252 VKSRNRDVVDLFEFGMGIHHAGMLRADRGLTERLFSDGLLKVLVCTATLAWGVNLPAHTV 311
+N D+ D+ +G IHHAG+ R DR + E LFS G ++VLV TATLAWGVNLPAHTV
Sbjct: 791 DIVKNSDLKDILPYGFAIHHAGLSRGDREIVETLFSQGHVQVLVSTATLAWGVNLPAHTV 850
Query: 312 VIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHEKLAYYLRLLTSQ 371
+IKGTQ+Y+P+ G W +L LDVMQ+ GRAGRPQ+D+ GEGIIIT + +L YYL L+ Q
Sbjct: 851 IIKGTQVYNPEKGAWMELSPLDVMQMLGRAGRPQYDQHGEGIIITGYSELQYYLSLMNEQ 910
Query: 372 LPIESQFITSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRMNPLAYGIGWDEVMAD 431
LPIESQFI+ L D LNAE+ LGTV N +EAC WLGYTYL+IRM NP YG+ D + D
Sbjct: 911 LPIESQFISKLADQLNAEIVLGTVQNAREACHWLGYTYLYIRMVRNPTLYGLAPDALAKD 970
Query: 432 PNLSSKQRSLVIDAARALDKAKMMRFDEKSGSFYCTELGRIASHFYIQFSSVQTYNEMLR 491
L ++ L+ AA LDK ++++D KSG F T+LGRIAS++YI ++ TYNE L+
Sbjct: 971 VVLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYYYITHGTIATYNEHLK 1030
Query: 492 RHMND 496
M D
Sbjct: 1031 PTMGD 1035
Score = 245 bits (626), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 154/486 (31%), Positives = 255/486 (52%), Gaps = 36/486 (7%)
Query: 20 FKIVYVAPMKALAAEVTRTFSQRLSP-LNMTVRELTGDMQLSKNELEETQMIVTTPEKWD 78
++VY+AP++A+A E R + + L + V ELTG+ L LE+ Q+I++TPEKWD
Sbjct: 1399 MRVVYIAPLEAIAKEQFRIWEGKFGKGLGLRVVELTGETALDLKLLEKGQIIISTPEKWD 1458
Query: 79 VITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVESSQTM--IRIVGLS 136
++R+ V L I+DE+HL+ GPV+E +V+R +R + SSQ + IRIV LS
Sbjct: 1459 ALSRRWKQRKYVQQVSLFIVDELHLIGGQHGPVLEVIVSR-MRYI-SSQVINKIRIVALS 1516
Query: 137 ATLPNYLEVAQFLRVNPDAGLFFFDSTYRPVPLAQQYIGISEQNFAARNELLNDICYKKV 196
+L N ++ +++ + GLF F RPVPL G+ +F AR + + Y +
Sbjct: 1517 TSLANAKDLGEWIGAS-SHGLFNFPPGVRPVPLEIHIQGVDISSFEARMQAMTKPTYTAI 1575
Query: 197 VESIRQGYQAMVFVHSRKDTAKTAQKLVE------------LVQKHEELELFSNNTHAQY 244
V+ + A+VFV +RK TA L+ L+ K EEL+ F
Sbjct: 1576 VQHAKNKKPAIVFVPTRKHVRLTAVDLMAYSHMDNPQSPDFLLGKLEELDPF-------- 1627
Query: 245 SLMKREVVKSRNRDVVDLFEFGMGIHHAGMLRADRGLTERLFSDGLLKVLVCTATLAWGV 304
V + R + + G+G H G+ D+ + +LF G ++V V +++L WG
Sbjct: 1628 ------VEQIREETLKETLCHGIGYLHEGLSSLDQEIVTQLFEAGRIQVCVMSSSLCWGT 1681
Query: 305 NLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHEKLAYY 364
L AH VV+ GTQ YD + D + D++Q+ GRA RP D +G+ +I + YY
Sbjct: 1682 PLTAHLVVVMGTQYYDGRENSHSDYPVPDLLQMMGRASRPLLDNAGKCVIFCHAPRKEYY 1741
Query: 365 LRLLTSQLPIESQFITSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRMNPLAYGIG 424
+ L P+ESQ L DN NAEV G + N ++A +L +T+++ R+ NP Y +
Sbjct: 1742 KKFLYEAFPVESQLQHFLHDNFNAEVVAGVIENKQDAVDYLTWTFMYRRLPQNPNYYNL- 1800
Query: 425 WDEVMADPNLSSKQRSLVIDAARALDKAKMMRFDEKSGSFYCTELGRIASHFYIQFSSVQ 484
+ ++ +LS LV + L+ +K + +++ LG IAS++YI +++++
Sbjct: 1801 --QGVSHRHLSDHLSELVENTLSDLEASKCIEVEDEM-ELSPLNLGMIASYYYISYTTIE 1857
Query: 485 TYNEML 490
++ +L
Sbjct: 1858 RFSSLL 1863
>AT3G27730.1 | Symbols: RCK, MER3 | ATP binding;ATP-dependent
helicases;DNA helicases | chr3:10273952-10280213 REVERSE
LENGTH=1133
Length = 1133
Score = 248 bits (633), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 158/494 (31%), Positives = 269/494 (54%), Gaps = 32/494 (6%)
Query: 11 KDG-YLH-KDEFKIVYVAPMKALAAEVTRTFSQRLSPLNMTVRELTGDMQ-LSKNELEET 67
K+G +LH K K VY++P KAL E R ++Q+ + ++ ELTGD + S +++
Sbjct: 71 KEGSFLHAKGALKTVYISPSKALVQEKLRDWNQKFNSWGISCLELTGDNETYSTKNIQDA 130
Query: 68 QMIVTTPEKWDVITR---KSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVE 124
+I+TTPEK+D ++R S + + L++IDEVHLLND RG +EA+V+R L+ +
Sbjct: 131 DIILTTPEKFDAVSRYRVTSGGLGFFSDIALVLIDEVHLLNDPRGAALEAIVSR-LKILS 189
Query: 125 SSQTM-------IRIVGLSATLPNYLEVAQFLRVNPDAGLFFFDSTYRPVPLAQQYIGIS 177
S+ + +R++ +SAT+PN ++A++L+V P AG+ F RPV L + G +
Sbjct: 190 SNHELRSSTLASVRLLAVSATIPNIEDLAEWLKV-PTAGIKRFGEEMRPVKLTTKVFGYA 248
Query: 178 EQNFAARNELLNDICYKKVVESI----RQGYQAMVFVHSRKDTAKTAQKLVELVQKHEEL 233
AA+N+ L + + + I +G A+VF +RK + AQKL + +
Sbjct: 249 ----AAKNDFLFEKRLQNYIYDILMQYSKGKSALVFCSTRKGAQEAAQKLAQTAMTYG-- 302
Query: 234 ELFSN---NTHAQYSLMKREVVKSRNRDVVDLFEFGMGIHHAGMLRADRGLTERLFSDGL 290
+SN + Q ++ ++ + G+G H+ G+ + DR L E LF +G
Sbjct: 303 --YSNPFIKSREQLERLREASPMCSDKQMQSYILQGVGYHNGGLCQKDRSLVEGLFLNGD 360
Query: 291 LKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSG 350
++V+ T TLA G+NLPAHTVVIK TQ ++ + G + + ++Q+ GRAGRP FD +G
Sbjct: 361 IQVICTTNTLAHGINLPAHTVVIKSTQHFNKEKGHYMEYDRSTLLQMSGRAGRPPFDDTG 420
Query: 351 EGIIITSHEKLAYYLRLLTSQLPIESQFITSLKDNLNAEVALGTVTNVKEACAWLGYTYL 410
II+T E + Y LL +ESQ + L ++L AE+ T++++ A W+ +YL
Sbjct: 421 MVIIMTRRETVHLYENLLNGCEVVESQLLPCLIEHLTAEIVQLTISDITRAIEWMKCSYL 480
Query: 411 FIRMRMNPLAYGIGWDEVMADPNLSSKQRSLVIDAARALDKAKMMRFDEKSGSFYCTELG 470
++RM+ NP Y I + + + + L + L + +M+ D E G
Sbjct: 481 YVRMKKNPENYAI--KKGIPKDRVEKHLQELCLQKINELSQYQMIWTDTDGFVLKPEEPG 538
Query: 471 RIASHFYIQFSSVQ 484
R+ + +Y++F +++
Sbjct: 539 RLMTKYYLKFETMK 552
>AT4G32700.2 | Symbols: | helicases;ATP-dependent helicases;nucleic
acid binding;ATP binding;DNA-directed DNA
polymerases;DNA binding | chr4:15767440-15779185 FORWARD
LENGTH=2154
Length = 2154
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 111/435 (25%), Positives = 188/435 (43%), Gaps = 65/435 (14%)
Query: 25 VAPMKALAAEVTRTFSQRLSPLNMTVRELTGDMQLSKNELEETQMIVTTPEKWD-VITRK 83
V P ++ AE L PL VR G+ Q ++T + V T EK + +I R
Sbjct: 566 VLPYVSICAEKAEHLEVLLEPLGKHVRSYYGN-QGGGTLPKDTSVAVCTIEKANSLINRL 624
Query: 84 SSDMSLSMLVKLLIIDEVHLLNDD-RGPVIEALVARTLRQVESSQTM------------- 129
+ LS L +++IDE+H++ D RG ++E ++ + LR +
Sbjct: 625 LEEGRLSEL-GIIVIDELHMVGDQHRGYLLELMLTK-LRYAAGEGSSESSSGESSGTSSG 682
Query: 130 -------IRIVGLSATLPNYLEVAQFLRVNPDAGLFFFDSTYRPVPLAQQYIGISEQNFA 182
++IVG+SAT+PN VA +L+ + + +RPVPL ++YI + +
Sbjct: 683 KADPAHGLQIVGMSATMPNVGAVADWLQA------ALYQTEFRPVPL-EEYIKVGSTIYN 735
Query: 183 ARNELLNDI-------------CYKKVVESIRQGYQAMVFVHSRKDTAKTAQKLVELVQK 229
+ E++ I + E +++G ++F SRK TA+ + +L+ K
Sbjct: 736 KKMEVVRTIPKAADMGGKDPDHIVELCNEVVQEGNSVLIFCSSRKGCESTARHISKLI-K 794
Query: 230 HEELELFSNNTHAQYSLMKREVVKSRNRDVVDLFE----FGMGIHHAGMLRADRGLTERL 285
+ + + N+ + ++ V + E G+ HHAG+ +R + E
Sbjct: 795 NVPVNVDGENSEFMDIRSAIDALRRSPSGVDPVLEETLPSGVAYHHAGLTVEEREIVETC 854
Query: 286 FSDGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQ 345
+ GL++VL T+TLA GVNLPA V+ + + G R Q+ GRAGR
Sbjct: 855 YRKGLVRVLTATSTLAAGVNLPARRVIFRQPMIGRDFIDGTR------YKQMSGRAGRTG 908
Query: 346 FDKSGEGIIITSHEKLAYYLRLLTSQLPIESQFITSLKDNLNAE----VALGTVTNVKEA 401
D G+ ++I +L + LL P ++ K+ + VA G V K+
Sbjct: 909 IDTKGDSVLICKPGELKRIMALLNETCPPLQSCLSEDKNGMTHAILEVVAGGIVQTAKDI 968
Query: 402 -----CAWLGYTYLF 411
C L T F
Sbjct: 969 HRYVRCTLLNSTKPF 983
>AT1G59760.1 | Symbols: | RNA helicase, ATP-dependent, SK12/DOB1
protein | chr1:21984571-21990110 REVERSE LENGTH=988
Length = 988
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 101/395 (25%), Positives = 175/395 (44%), Gaps = 78/395 (19%)
Query: 17 KDEFKIVYVAPMKALAAEVTRTFSQRLSPLNMTVRELTGDMQLSKNELEETQMIVTTPEK 76
K+ +++Y +P+KAL+ + R F + S + + +TGD+ + N +V T E
Sbjct: 108 KENQRVIYTSPIKALSNQKYRDFKEEFSDVGL----MTGDVTIDPN----ASCLVMTTEI 159
Query: 77 WDVITRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEALVARTLRQVESSQTMIRIVGL 135
+ K S++ V +I DEVH + D +RG V E + + R V L
Sbjct: 160 LRSMQYKGSEIMRE--VAWIIFDEVHYMRDSERGVVWEESIVMAPKNS-------RFVFL 210
Query: 136 SATLPNYLEVAQFLRVNPDAGLFFFDSTYRPVPLAQQYIGISEQNFAARNE---LLNDIC 192
SAT+PN E A ++ + YRP PL Q Y+ F A L+ D
Sbjct: 211 SATVPNAKEFADWVAKVHQQPCHIVYTDYRPTPL-QHYV------FPAGGNGLYLVVDEK 263
Query: 193 YKKVVESIRQGYQAMVFVHS---RKDTAKTAQ--------------KLVELV--QKHEEL 233
K +S ++ A+V + ++D K + KLV+++ ++++ +
Sbjct: 264 SKFHEDSFQKSLNALVPTNESDKKRDNGKFQKGLVIGKLGEESDIFKLVKMIIQRQYDPV 323
Query: 234 ELFSNNTHAQYSL---MKREVVKSRNR--------------------------DVVDLFE 264
LFS + +L M + V+ S + +++ + +
Sbjct: 324 ILFSFSKKECEALAMQMSKMVLNSDDEKDAVETIFASAIDMLSDDDKKLPQVSNILPILK 383
Query: 265 FGMGIHHAGMLRADRGLTERLFSDGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAG 324
G+G+HH+G+L + + E LF +GL+K L T T + G+N+PA TVV + +D
Sbjct: 384 RGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKF 443
Query: 325 GWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHE 359
W G + +Q+ GRAGR DK G I++ +
Sbjct: 444 RWLSSG--EYIQMSGRAGRRGIDKRGICILMVDEK 476
>AT3G46960.1 | Symbols: | RNA helicase, ATP-dependent, SK12/DOB1
protein | chr3:17291004-17298067 REVERSE LENGTH=1347
Length = 1347
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 262 LFEFGMGIHHAGMLRADRGLTERLFSDGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDP 321
L G+G+HHAG+L + + E LF G++KVL T T A GVN PA TVV + +D
Sbjct: 710 LLHRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDALRKFDG 769
Query: 322 KAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHE 359
K +R L + Q+ GRAGR DK+G +++ E
Sbjct: 770 KE--FRQLLPGEYTQMAGRAGRRGLDKTGTVVVMCRDE 805
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 93/223 (41%), Gaps = 19/223 (8%)
Query: 21 KIVYVAPMKALAAEVTRTFSQRLSPLNMTVRELTGDMQLSKNELEETQMIVTTPEKWDVI 80
+ VY AP+K ++ + R F + V LTGD+ + E ++ T E +
Sbjct: 405 RAVYTAPIKTISNQKYRDFCGKFD-----VGLLTGDVSIRP----EASCLIMTTEILRSM 455
Query: 81 TRKSSDMSLSMLVKLLIIDEVHLLND-DRGPVIEALVARTLRQVESSQTMIRIVGLSATL 139
+ +D+ ++ +I DEVH +ND +RG V E ++ R I V LSAT+
Sbjct: 456 LYRGADIIRD--IEWVIFDEVHYVNDVERGVVWEEVIIMLPRH-------INFVLLSATV 506
Query: 140 PNYLEVAQFLRVNPDAGLFFFDSTYRPVPLAQQYIGISEQNFAARNELLNDICYKKVVES 199
PN E A ++ + +T RPVPL E NE+ K +S
Sbjct: 507 PNTFEFADWIGRTKQKEIRVTGTTKRPVPLEHCLFYSGELYKVCENEVFLSKGIKDAKDS 566
Query: 200 IRQGYQAMVFVHSRKDTAKTAQKLVELVQKHEELELFSNNTHA 242
++ V V ++ +A + QKHE N H+
Sbjct: 567 QKKKNSNAVSVAPKQQMGSSAHQDGSKSQKHEAHSRGKQNKHS 609
>AT2G06990.1 | Symbols: HEN2 | RNA helicase, ATP-dependent,
SK12/DOB1 protein | chr2:2895135-2900909 FORWARD
LENGTH=995
Length = 995
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 4/131 (3%)
Query: 259 VVDLFEFGMGIHHAGMLRADRGLTERLFSDGLLKVLVCTATLAWGVNLPAHTVVIKGTQL 318
++ L + G+ +HH+G+L + L E LF +GL+K L T T A G+N+PA TVV +
Sbjct: 394 MLPLLQRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKK 453
Query: 319 YDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHEKLAYYLR--LLTSQLPIES 376
+D R +G + +Q+ GRAGR D+ G II+ + LR +L P+ S
Sbjct: 454 WD--GDSHRYIGSGEYIQMSGRAGRRGKDERGICIIMIDEQMEMNTLRDMMLGKPAPLLS 511
Query: 377 QFITSLKDNLN 387
F S LN
Sbjct: 512 TFRLSYYTILN 522
>AT1G70070.1 | Symbols: EMB25, PDE317, ISE2 | DEAD/DEAH box
helicase, putative | chr1:26390016-26394148 REVERSE
LENGTH=1171
Length = 1171
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 66/119 (55%), Gaps = 6/119 (5%)
Query: 266 GMGIHHAGMLRADRGLTERLFSDGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGG 325
G+ HHAG L + E LF GL+KV+ T TLA G+N+PA T VI KAG
Sbjct: 497 GIAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVISS---LSKKAGN 553
Query: 326 WR-DLGMLDVMQIFGRAGRPQFDKSGEGIII-TSHEKLAYYLRLLTSQL-PIESQFITS 381
R +LG ++ Q+ GRAGR D+ G +++ T+ E +L+ + + P+ SQF S
Sbjct: 554 ERIELGPNELYQMAGRAGRRGIDEKGYTVLVQTAFEGAEECCKLVFAGVKPLVSQFTAS 612
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 80/155 (51%), Gaps = 21/155 (13%)
Query: 21 KIVYVAPMKALAAEVTRTFSQRLSPLNMTVRELTGDMQLSKNELEETQMIVTTPEKWDVI 80
++ Y P+KAL+ + R F + N+ + LTGD ++K+ Q+++ T E +
Sbjct: 199 RLFYTTPLKALSNQKFREFRETFGDDNVGL--LTGDSAINKD----AQIVIMTTEILRNM 252
Query: 81 TRKSSDMSLS----MLVKLLIIDEVHLLND-DRGPVIEALVARTLRQVESSQTMIRIVGL 135
+S M+ S V +++DEVH L+D RG V E +V ++V+ ++ L
Sbjct: 253 LYQSVGMASSGTGLFHVDAIVLDEVHYLSDISRGTVWEEIVIYCPKEVQ-------LICL 305
Query: 136 SATLPNYLEVAQFL-RVNPDAGLFFFDSTYRPVPL 169
SAT+ N E+A ++ ++ L ST RPVPL
Sbjct: 306 SATVANPDELAGWIGEIHGKTEL--VTSTRRPVPL 338