Miyakogusa Predicted Gene

Lj0g3v0354159.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0354159.1 tr|G7IAW3|G7IAW3_MEDTR 60S ribosomal protein L7
OS=Medicago truncatula GN=MTR_1g108780 PE=4 SV=1,54.32,2e-17,no
description,DNA-binding pseudobarrel domain; B3,B3 DNA binding domain;
DNA-binding pseudobarrel d,CUFF.24381.1
         (83 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G18990.1 | Symbols: VRN1, REM39 | AP2/B3-like transcriptional...    62   6e-11
AT1G49480.1 | Symbols: RTV1 | related to vernalization1 1 | chr1...    62   6e-11
AT4G33280.1 | Symbols:  | AP2/B3-like transcriptional factor fam...    54   3e-08

>AT3G18990.1 | Symbols: VRN1, REM39 | AP2/B3-like transcriptional
           factor family protein | chr3:6549077-6551568 REVERSE
           LENGTH=341
          Length = 341

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 4   VPNPFIREYFNDMQQTIMLQYEKKLWPVKLICYPKKGSGKLSKGWVEFAGKSKLVVGDAC 63
           +P+ F  +Y + +   I +Q  +K WPV+  C  K G  K S+GW EF  ++ L  GD C
Sbjct: 261 LPSGFAEKYLSGISGFIKVQLAEKQWPVR--CLYKAGRAKFSQGWYEFTLENNLGEGDVC 318

Query: 64  VFELINKEDPVLDVHIFR 81
           VFEL+   D VL V  FR
Sbjct: 319 VFELLRTRDFVLKVTAFR 336


>AT1G49480.1 | Symbols: RTV1 | related to vernalization1 1 |
           chr1:18314596-18315460 REVERSE LENGTH=226
          Length = 226

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 4   VPNPFIREYFNDMQQTIMLQYEKKLWPVKLICYPKKGSGKLSKGWVEFAGKSKLVVGDAC 63
           +P+ F  +Y + +   I LQ  +K WPV+  C  K G  K S+GW EF  ++ +  GD C
Sbjct: 146 LPSGFAEKYLSGISGFIKLQLGEKQWPVR--CLYKAGRAKFSQGWYEFTLENNIGEGDVC 203

Query: 64  VFELINKEDPVLDVHIFR 81
           VFEL+   D VL+V  FR
Sbjct: 204 VFELLRTRDFVLEVTAFR 221


>AT4G33280.1 | Symbols:  | AP2/B3-like transcriptional factor family
           protein | chr4:16047357-16049310 REVERSE LENGTH=337
          Length = 337

 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 17  QQTIMLQYEKKLWPVKLICYPKKGSGKLSKGWVEFAGKSKLVVGDACVFELINKED-PV- 74
           +Q +++Q ++  W +K   +  +GSG +S GW +F   + L  GD CVFE  N E  P+ 
Sbjct: 253 RQEVVMQVDQTKWEMKFNIFGARGSGGISTGWKKFVQDNNLREGDVCVFEPANSETKPLH 312

Query: 75  LDVHIFRG 82
           L+V+IFRG
Sbjct: 313 LNVYIFRG 320