Miyakogusa Predicted Gene

Lj0g3v0354109.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0354109.1 tr|G7IHK9|G7IHK9_MEDTR Riboflavin biosynthesis
protein ribBA OS=Medicago truncatula GN=MTR_2g096330 ,77.63,0,GTP
CYCLOHYDROLASE II,NULL; GTP CYCLOHYDROLASE II-RELATED,NULL;
GTP_cyclohydro2,GTP cyclohydrolase I,CUFF.24379.1
         (531 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G59750.1 | Symbols:  | DHBP synthase RibB-like alpha/beta dom...   758   0.0  
AT5G59750.2 | Symbols:  | DHBP synthase RibB-like alpha/beta dom...   741   0.0  
AT5G64300.1 | Symbols: ATGCH, GCH, ATRIBA1, RFD1 | GTP cyclohydr...   604   e-173
AT2G22450.1 | Symbols:  | riboflavin biosynthesis protein, putat...   475   e-134

>AT5G59750.1 | Symbols:  | DHBP synthase RibB-like alpha/beta
           domain;GTP cyclohydrolase II | chr5:24073397-24075411
           FORWARD LENGTH=509
          Length = 509

 Score =  758 bits (1957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/511 (72%), Positives = 443/511 (86%), Gaps = 12/511 (2%)

Query: 1   MDSASFPHPLISQVITSSSFHRSYPN--HQSARFSLWNNRLWNSALCATGYSAAGIEDVF 58
           MDSA + HP I        F  S+ N  + S RF+    RL + +      S     +VF
Sbjct: 2   MDSALY-HPRIF-------FAHSFINGLYSSPRFANTCWRLVSRSSWEIKASENSDRNVF 53

Query: 59  DDSNLKRNDNGSFFGALAPFETLKAEITPETNDFFVSDAEGDPDCPSEGYSSVEQALNTL 118
           D++ +++ D GS F + A FET+ AEITPET+DFFVSDAEGDPDCP++GYSS+E AL  L
Sbjct: 54  DENPVRKTD-GSLFDS-ASFETVDAEITPETDDFFVSDAEGDPDCPTQGYSSIELALQAL 111

Query: 119 RQGKFVIVVDDENGDIQGNLIMAASLTSTKDVAFMVKHGSGIVSVGMKEEDLQRLNLPLM 178
           R+GKFVIVVDDE GD++GNLIMAA+LTS KD+AF++K+GSGIVSVGMK+E+L+RL+L LM
Sbjct: 112 RKGKFVIVVDDETGDVEGNLIMAATLTSPKDIAFLIKNGSGIVSVGMKKENLERLSLTLM 171

Query: 179 SPETEDEDSSAPTFTITVDAKYGTSTGVSAADRAKTVLALSSPVSTSEDFIKPGHVFPLK 238
           SPE EDEDSSAPTFTITVDAK GTSTGVSA+DRA TVLALSS  +  +DF +PGHVFPLK
Sbjct: 172 SPEMEDEDSSAPTFTITVDAKSGTSTGVSASDRAMTVLALSSLDAKPDDFRRPGHVFPLK 231

Query: 239 YRNGGVLRRAGHTEASVDLVTLAGLSPVSVLTALVDEDGGSMASLPYLRKLAFEYSIPIV 298
           YR+GGVLRRAGHTEASVDL+ LAGL P+SVL+A++D++ GSMASLPY++KLA E+ IPIV
Sbjct: 232 YRDGGVLRRAGHTEASVDLMILAGLRPLSVLSAILDQEDGSMASLPYMKKLATEHDIPIV 291

Query: 299 SITDLIRYRRKREKLVERTSVSRLPTKWGLFQAYCYRSKLDGTEHIAIVKGDIGDGQDVL 358
           S+TDLIRYRRKR+KLVER +VSRLPTKWGLFQAYCYRSKLDGTE+IA+VKG++G+G+D+L
Sbjct: 292 SLTDLIRYRRKRDKLVERITVSRLPTKWGLFQAYCYRSKLDGTENIALVKGNVGNGEDIL 351

Query: 359 VRVHSECLTGDIFGSARCDCGDQLDLAMRLIEEAGRGVVVYLRGHEGRGIGLGHKLKAYN 418
           VRVHSECLTGDIFGSARCDCG+QLDLAM LIE+ GRGVVVYLRGHEGRGIGLGHKL+AYN
Sbjct: 352 VRVHSECLTGDIFGSARCDCGNQLDLAMELIEKEGRGVVVYLRGHEGRGIGLGHKLRAYN 411

Query: 419 LQDQGHDTVQANIELGLAVDAREYGIGAQILGDIGVRTMRLMTNNPAKFTGLKGYGLAVL 478
           LQD+GHDTVQAN+ELGL++D+REYGIGAQ+L DIGVRTMRLMTNNPAKFTGLKGYGLAV+
Sbjct: 412 LQDEGHDTVQANVELGLSIDSREYGIGAQMLRDIGVRTMRLMTNNPAKFTGLKGYGLAVV 471

Query: 479 GRVPVMTPITEENKRYLETKRTKMGHVYGSD 509
           GRVPV+TPIT+EN+RY+ETKR KMGH+Y SD
Sbjct: 472 GRVPVVTPITKENRRYMETKRKKMGHIYISD 502


>AT5G59750.2 | Symbols:  | DHBP synthase RibB-like alpha/beta
           domain;GTP cyclohydrolase II | chr5:24073397-24075411
           FORWARD LENGTH=543
          Length = 543

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/545 (68%), Positives = 443/545 (81%), Gaps = 46/545 (8%)

Query: 1   MDSASFPHPLISQVITSSSFHRSYPN--HQSARFSLWNNRLWNSALCATGYSAAGIEDVF 58
           MDSA + HP I        F  S+ N  + S RF+    RL + +      S     +VF
Sbjct: 2   MDSALY-HPRIF-------FAHSFINGLYSSPRFANTCWRLVSRSSWEIKASENSDRNVF 53

Query: 59  DDSNLKRNDNGSFFGALAPFETLKAEITPETNDFFVSDAEGDPDCPSEGYSSVEQALNTL 118
           D++ +++ D GS F + A FET+ AEITPET+DFFVSDAEGDPDCP++GYSS+E AL  L
Sbjct: 54  DENPVRKTD-GSLFDS-ASFETVDAEITPETDDFFVSDAEGDPDCPTQGYSSIELALQAL 111

Query: 119 RQGK----------------------------------FVIVVDDENGDIQGNLIMAASL 144
           R+GK                                  FVIVVDDE GD++GNLIMAA+L
Sbjct: 112 RKGKVCSLTIFLKTSDYDDLFLQLYRFGLTKKLSLMFQFVIVVDDETGDVEGNLIMAATL 171

Query: 145 TSTKDVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPETEDEDSSAPTFTITVDAKYGTST 204
           TS KD+AF++K+GSGIVSVGMK+E+L+RL+L LMSPE EDEDSSAPTFTITVDAK GTST
Sbjct: 172 TSPKDIAFLIKNGSGIVSVGMKKENLERLSLTLMSPEMEDEDSSAPTFTITVDAKSGTST 231

Query: 205 GVSAADRAKTVLALSSPVSTSEDFIKPGHVFPLKYRNGGVLRRAGHTEASVDLVTLAGLS 264
           GVSA+DRA TVLALSS  +  +DF +PGHVFPLKYR+GGVLRRAGHTEASVDL+ LAGL 
Sbjct: 232 GVSASDRAMTVLALSSLDAKPDDFRRPGHVFPLKYRDGGVLRRAGHTEASVDLMILAGLR 291

Query: 265 PVSVLTALVDEDGGSMASLPYLRKLAFEYSIPIVSITDLIRYRRKREKLVERTSVSRLPT 324
           P+SVL+A++D++ GSMASLPY++KLA E+ IPIVS+TDLIRYRRKR+KLVER +VSRLPT
Sbjct: 292 PLSVLSAILDQEDGSMASLPYMKKLATEHDIPIVSLTDLIRYRRKRDKLVERITVSRLPT 351

Query: 325 KWGLFQAYCYRSKLDGTEHIAIVKGDIGDGQDVLVRVHSECLTGDIFGSARCDCGDQLDL 384
           KWGLFQAYCYRSKLDGTE+IA+VKG++G+G+D+LVRVHSECLTGDIFGSARCDCG+QLDL
Sbjct: 352 KWGLFQAYCYRSKLDGTENIALVKGNVGNGEDILVRVHSECLTGDIFGSARCDCGNQLDL 411

Query: 385 AMRLIEEAGRGVVVYLRGHEGRGIGLGHKLKAYNLQDQGHDTVQANIELGLAVDAREYGI 444
           AM LIE+ GRGVVVYLRGHEGRGIGLGHKL+AYNLQD+GHDTVQAN+ELGL++D+REYGI
Sbjct: 412 AMELIEKEGRGVVVYLRGHEGRGIGLGHKLRAYNLQDEGHDTVQANVELGLSIDSREYGI 471

Query: 445 GAQILGDIGVRTMRLMTNNPAKFTGLKGYGLAVLGRVPVMTPITEENKRYLETKRTKMGH 504
           GAQ+L DIGVRTMRLMTNNPAKFTGLKGYGLAV+GRVPV+TPIT+EN+RY+ETKR KMGH
Sbjct: 472 GAQMLRDIGVRTMRLMTNNPAKFTGLKGYGLAVVGRVPVVTPITKENRRYMETKRKKMGH 531

Query: 505 VYGSD 509
           +Y SD
Sbjct: 532 IYISD 536


>AT5G64300.1 | Symbols: ATGCH, GCH, ATRIBA1, RFD1 | GTP
           cyclohydrolase II | chr5:25718459-25720790 FORWARD
           LENGTH=543
          Length = 543

 Score =  604 bits (1557), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 289/436 (66%), Positives = 358/436 (82%), Gaps = 2/436 (0%)

Query: 80  TLKAEITPE-TNDFFVSDAEGDPDCPSEGYSSVEQALNTLRQGKFVIVVDDENGDIQGNL 138
           TL A+  P   N F   D + + D P+ G+SS+ +A+  +RQGK V+VVDDE+ + +G+L
Sbjct: 99  TLAADSAPAPANGFVAEDDDFELDLPTPGFSSIPEAIEDIRQGKLVVVVDDEDRENEGDL 158

Query: 139 IMAASLTSTKDVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPETEDEDSSAPTFTITVDA 198
           +MAA L + + +AF+V+HG+GIV V MKE+DL+RL+LPLM  + E+E+  +  FT+TVDA
Sbjct: 159 VMAAQLATPEAMAFIVRHGTGIVCVSMKEDDLERLHLPLMVNQKENEEKLSTAFTVTVDA 218

Query: 199 KYGTSTGVSAADRAKTVLALSSPVSTSEDFIKPGHVFPLKYRNGGVLRRAGHTEASVDLV 258
           K+GT+TGVSA DRA T+L+L+S  S  EDF +PGH+FPLKYR GGVL+RAGHTEASVDL 
Sbjct: 219 KHGTTTGVSARDRATTILSLASRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLT 278

Query: 259 TLAGLSPVSVLTALVDEDGGSMASLPYLRKLAFEYSIPIVSITDLIRYRRKREKLVERTS 318
            LAGL PV VL  +VD+DG SMA LP LR+ A E ++ +VSI DLIRYRRKR+KLVER S
Sbjct: 279 VLAGLDPVGVLCEIVDDDG-SMARLPKLREFAAENNLKVVSIADLIRYRRKRDKLVERAS 337

Query: 319 VSRLPTKWGLFQAYCYRSKLDGTEHIAIVKGDIGDGQDVLVRVHSECLTGDIFGSARCDC 378
            +R+PT WG F AYCYRS LDG EHIA+VKG+IGDGQD+LVRVHSECLTGDIFGSARCDC
Sbjct: 338 AARIPTMWGPFTAYCYRSILDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDC 397

Query: 379 GDQLDLAMRLIEEAGRGVVVYLRGHEGRGIGLGHKLKAYNLQDQGHDTVQANIELGLAVD 438
           G+QL L+M+ IE  GRGV+VYLRGHEGRGIGLGHKL+AYNLQD G DTV+AN ELGL VD
Sbjct: 398 GNQLALSMQQIEATGRGVLVYLRGHEGRGIGLGHKLRAYNLQDAGRDTVEANEELGLPVD 457

Query: 439 AREYGIGAQILGDIGVRTMRLMTNNPAKFTGLKGYGLAVLGRVPVMTPITEENKRYLETK 498
           +REYGIGAQI+ D+GVRTM+LMTNNPAK+ GLKGYGLA++GRVP+++ IT+ENKRYLETK
Sbjct: 458 SREYGIGAQIIRDLGVRTMKLMTNNPAKYVGLKGYGLAIVGRVPLLSLITKENKRYLETK 517

Query: 499 RTKMGHVYGSDIQGSL 514
           RTKMGH+YG   +G +
Sbjct: 518 RTKMGHMYGLKFKGDV 533


>AT2G22450.1 | Symbols:  | riboflavin biosynthesis protein, putative
           | chr2:9530654-9532691 FORWARD LENGTH=476
          Length = 476

 Score =  475 bits (1222), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 241/412 (58%), Positives = 309/412 (75%), Gaps = 10/412 (2%)

Query: 75  LAPFETLKAEITPETNDF-FVSDAEGDPDCPSEGYSSVEQALNTLRQGKFVIVVDDENGD 133
           L  F TL AE+ P T D   V D E D D P++G++S+ QA+  +R GK V+VVDDE+ +
Sbjct: 72  LVSFGTLAAEMIPTTMDSPEVEDEEFDLDRPTDGFASIPQAIEDIRHGKMVVVVDDEDRE 131

Query: 134 IQGNLIMAASLTSTKDVAFMVKHGSGIVSVGMKEEDLQRLNLPLMSPETEDEDSSAPTFT 193
            +G+LIMAASL + + +AF+VKHG+GIV V MK EDL+RL LPLM    ++E+     FT
Sbjct: 132 NEGDLIMAASLATPEAMAFVVKHGTGIVCVSMKGEDLERLELPLMVTRKDNEEKLRTAFT 191

Query: 194 ITVDAKYGTSTGVSAADRAKTVLALSSPVSTSEDFIKPGHVFPLKYRNGGVLRRAGHTEA 253
           ++VDAK GTSTGVSA DRA+T+L L+S  S  EDF +PGH+FPL+YR GGVL+RAGHTEA
Sbjct: 192 VSVDAKKGTSTGVSARDRAQTILTLASKDSKPEDFNRPGHIFPLRYREGGVLKRAGHTEA 251

Query: 254 SVDLVTLAGLSPVSVLTALVDEDGGSMASLPYLRKLAFEYSIPIVSITDLIRYRRKREKL 313
           SVDL  LAGL PVSVL  +VD+D GSMA LP LR+ A E ++ ++SI DLIRYRRKRE+L
Sbjct: 252 SVDLTVLAGLEPVSVLCEIVDDD-GSMARLPRLRQFAQENNLKLISIADLIRYRRKRERL 310

Query: 314 VERTSVSRLPTKWGLFQAYCYRSKLDGTEHIAIVKGDIGDGQDVLVRVHSECLTGDIFGS 373
           VE T+V+ +PT WG F+A+C++S LDG EHIA+VKG+IGDG+D+LVRVH+EC+T DIFG+
Sbjct: 311 VEFTAVAPIPTMWGPFKAHCFKSLLDGVEHIAMVKGEIGDGKDILVRVHAECITDDIFGN 370

Query: 374 ARCDCGDQLDLAMRLIEEAGRGVVVYLRGHEGRGIGLGHKLKAYNLQDQGHDTVQANIEL 433
           +    G QL +AMRLIEE GRGV VYLRG E +GI L HK + YN      + V      
Sbjct: 371 S--SGGKQLAIAMRLIEENGRGVFVYLRGPESKGIDLSHKPRTYNTNSDQAEGVS----- 423

Query: 434 GLAVDAREYGIGAQILGDIGVRTMRLMTNNPAKFTGLKGYGLAVLGRVPVMT 485
              V +REYGIGAQIL D+GVR M++MTNNPA + GLKGYGL++ G+VP++T
Sbjct: 424 -FPVASREYGIGAQILRDLGVREMKVMTNNPAHYVGLKGYGLSISGKVPLIT 474