Miyakogusa Predicted Gene

Lj0g3v0353979.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0353979.1 CUFF.24365.1
         (126 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G11130.1 | Symbols:  | Clathrin, heavy chain | chr3:3482575-3...   126   3e-30
AT3G08530.1 | Symbols:  | Clathrin, heavy chain | chr3:2587171-2...   120   3e-28

>AT3G11130.1 | Symbols:  | Clathrin, heavy chain |
            chr3:3482575-3491667 REVERSE LENGTH=1705
          Length = 1705

 Score =  126 bits (317), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 61/76 (80%), Positives = 66/76 (86%)

Query: 47   VERVDADLWEKVLTPENEFRRQLIDQVVSTALPESKSPDQISAAVKAFRTADLPHELIEL 106
            VER+D DLWEKVLT ENE+RRQLIDQVVSTALPESKSP+Q+SAAVKAF TADLPHELIEL
Sbjct: 962  VERMDGDLWEKVLTEENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIEL 1021

Query: 107  LEKFVLQNYVIAETLN 122
            LEK VLQN   +   N
Sbjct: 1022 LEKIVLQNSAFSGNFN 1037


>AT3G08530.1 | Symbols:  | Clathrin, heavy chain |
            chr3:2587171-2595411 REVERSE LENGTH=1703
          Length = 1703

 Score =  120 bits (300), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 57/76 (75%), Positives = 64/76 (84%)

Query: 47   VERVDADLWEKVLTPENEFRRQLIDQVVSTALPESKSPDQISAAVKAFRTADLPHELIEL 106
            VER+D DLW+KVL   N++RRQLIDQVVSTALPESKSP+Q+SAAVKAF TADLPHELIEL
Sbjct: 962  VERMDGDLWDKVLDENNDYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIEL 1021

Query: 107  LEKFVLQNYVIAETLN 122
            LEK VLQN   +   N
Sbjct: 1022 LEKIVLQNSAFSGNFN 1037