Miyakogusa Predicted Gene

Lj0g3v0353029.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0353029.2 tr|B9MYD9|B9MYD9_POPTR Cc-nbs-lrr resistance
protein OS=Populus trichocarpa GN=POPTRDRAFT_782352
PE=,29.72,0.000000000002,L domain-like,NULL; LRR_7,NULL; no
description,NULL; seg,NULL,CUFF.24298.2
         (407 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G14460.1 | Symbols:  | LRR and NB-ARC domains-containing dise...   133   3e-31
AT3G14470.1 | Symbols:  | NB-ARC domain-containing disease resis...    49   5e-06

>AT3G14460.1 | Symbols:  | LRR and NB-ARC domains-containing disease
            resistance protein | chr3:4851990-4856264 REVERSE
            LENGTH=1424
          Length = 1424

 Score =  133 bits (334), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 107/327 (32%), Positives = 159/327 (48%), Gaps = 16/327 (4%)

Query: 69   SKIVVLQELPVSIECLTIEASPMVT---ESIFEAFINKKPTCLRSLELRDCSCSFGMSFP 125
            + I  L ELP +++ L I++   +T   E++ E++ N         EL   +C    SFP
Sbjct: 1081 TDISHLMELPQNLQSLHIDSCDGLTSLPENLTESYPNLH-------ELLIIACHSLESFP 1133

Query: 126  GGCLPASLKTLYIEDFRKLEFPQ--QQKQTHELLEWLEIKSSCDSLTSLPLEAFPNLKRL 183
            G   P +LKTLYI D +KL F +  Q  +++  LE+L I SSC +L + PL  FP L+ L
Sbjct: 1134 GSHPPTTLKTLYIRDCKKLNFTESLQPTRSYSQLEYLFIGSSCSNLVNFPLSLFPKLRSL 1193

Query: 184  SISGCXXXXXXXXXXXRVFALQNLILLEVRECPNLVSLAREGLAAPNLIRIVVSDCDKLE 243
            SI  C                  L  LE+R+CPNL +  + GL  P L  +++S+C KL+
Sbjct: 1194 SIRDCESFKTFSIHAGLGDDRIALESLEIRDCPNLETFPQGGLPTPKLSSMLLSNCKKLQ 1253

Query: 244  SXXXXXXXXXXXXKSLQIGNCPRIESFPAEGMPPSLTFIEISNCEKLVSGVAWPSMDM-- 301
            +             SL I  CP IE+ P  G P +L  + IS C+KL   + W   D+  
Sbjct: 1254 ALPEKLFGLTSLL-SLFIIKCPEIETIPGGGFPSNLRTLCISLCDKLTPRIEWGLRDLEN 1312

Query: 302  LTHVRINGLCHGIKSFXXXXXXXXXXXXXXXGQFTSLETFDCKQLLHLTSLQRLAIDDCP 361
            L ++ I+G    I+SF                +F +L+T + K      +++ + I  C 
Sbjct: 1313 LRNLEIDGGNEDIESFPEEGLLPKSVFSLRISRFENLKTLNRKGFHDTKAIETMEISGCD 1372

Query: 362  KLNNMAGERLPASLTELHISACPLLTE 388
            KL     E LP  L+ L IS+C LLTE
Sbjct: 1373 KLQISIDEDLPP-LSCLRISSCSLLTE 1398


>AT3G14470.1 | Symbols:  | NB-ARC domain-containing disease resistance
            protein | chr3:4857940-4861104 FORWARD LENGTH=1054
          Length = 1054

 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 5/120 (4%)

Query: 127  GCLPA---SLKTLYIEDFRKLEF-PQQQKQTHELLEWLEIKSSCDSLTSLPLEAFPNLKR 182
            G LP    SL +L+I     L+F P   + ++  L+ L IKSSCD+L   PL  F NL +
Sbjct: 892  GTLPTFLPSLISLHIYKCGLLDFQPDHHEYSYRNLQTLSIKSSCDTLVKFPLNHFANLDK 951

Query: 183  LSISGCXXXXXXXXXXXRVFALQNLILLEVRECPNLVSLAREGLAAPNLIRIVVSDCDKL 242
            L +  C            +     L  L + +C NL  L +   A P  +++ +++C  L
Sbjct: 952  LEVDQCTSLYSLELSNEHLRGPNALRNLRINDCQNLQLLPKLN-ALPQNLQVTITNCRYL 1010