Miyakogusa Predicted Gene

Lj0g3v0352829.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0352829.1 Non Chatacterized Hit- tr|G7JGJ8|G7JGJ8_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,33.12,5e-18,coiled-coil,NULL;
seg,NULL,NODE_87623_length_1141_cov_9.510078.path2.1
         (310 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G40087.1 | Symbols:  | Plant transposase (Ptta/En/Spm family)...    67   1e-11
AT3G30200.1 | Symbols:  | Plant transposase (Ptta/En/Spm family)...    49   5e-06

>AT1G40087.1 | Symbols:  | Plant transposase (Ptta/En/Spm family) |
           chr1:14999762-15001868 REVERSE LENGTH=390
          Length = 390

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 86/159 (54%), Gaps = 7/159 (4%)

Query: 61  PKYKQY-WTADLIDKDEVIRETRLRLRDLKKLPTGKKVVIEWNE-EGQPVGEAFGLFLNY 118
           P+ K + W  ++ID D  I    +  +D+  +    +V++ ++E   QP+G++ GL  ++
Sbjct: 29  PECKTFKWKIEVIDVDGNIEGKMMTSKDVWIM-QNHRVIVHFDEYTNQPIGDSGGLLGSW 87

Query: 119 IYDLASNANKFPVNYDNWSAVPSTYKDRVWNDIIAVKFQVNDEEHKK-WILSNMGEKWEE 177
           +  L+++    P+NY +W  V    KDR W  +I  KF+ +D   +K +++  +G K ++
Sbjct: 88  LSQLSNDIMLLPINYTDWRLVSPHIKDRAWA-VIQSKFRFDDPMMRKDYVMGALGSKCKD 146

Query: 178 NRSWLYHEYYDPSLDLEENIHWGPDSIPKDQWISLLTEI 216
            +   + EY   +L+  E +   P+ +P+DQW  L+  I
Sbjct: 147 VKLRFWREYKRNNLN--ETLQNRPEKVPEDQWSHLVHLI 183


>AT3G30200.1 | Symbols:  | Plant transposase (Ptta/En/Spm family) |
           chr3:11827752-11834262 REVERSE LENGTH=510
          Length = 510

 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 57/108 (52%), Gaps = 4/108 (3%)

Query: 107 PVGEAFGLFLNYIYDLASNANKFPVNYDNWSAVPSTYKDRVWNDIIAVKFQVNDEEHKK- 165
           P  ++F   +  I  L+++    P+NY +W  V    KDR W  +I  KF+ +D   +K 
Sbjct: 196 PECKSFKWKIEVIGQLSNDVMLLPINYTDWRLVSPHIKDRAWA-VIQSKFRFDDPMMRKD 254

Query: 166 WILSNMGEKWEENRSWLYHEYYDPSLDLEENIHWGPDSIPKDQWISLL 213
           +++  +G + ++ +   + E+   +L+  E +   P+ +P+DQW  L+
Sbjct: 255 YVMGALGSRCKDVKLRFWREHKRNNLN--ETLENRPEKVPEDQWSHLV 300