Miyakogusa Predicted Gene

Lj0g3v0352669.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0352669.2 Non Chatacterized Hit- tr|I1JVH7|I1JVH7_SOYBN
Uncharacterized protein OS=Glycine max PE=3 SV=1,80,0,GTP-BINDING
PROTEIN ERA HOMOLOG (HERA)(ERA-W)(CONSERVED ERA-LIKE
GTPASE)(CEGA),NULL; MSS1/TRME-RELAT,CUFF.24265.2
         (325 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G78010.1 | Symbols:  | tRNA modification GTPase, putative | c...   382   e-106

>AT1G78010.1 | Symbols:  | tRNA modification GTPase, putative |
           chr1:29333535-29336297 FORWARD LENGTH=560
          Length = 560

 Score =  382 bits (981), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/293 (66%), Positives = 222/293 (75%), Gaps = 17/293 (5%)

Query: 44  VKPRACSDNHHRSYRVVLNKDERLGERVGH-----NNTTELGNSTTTIAAIVTSLGGPPA 98
           +KPRA S  ++    +V   DER+   VG       +  +   S++TI AIVT +GGPP 
Sbjct: 50  LKPRAQSSENNS---LVFKGDERVVGLVGKVVDDAFDKVDRFQSSSTIVAIVTPIGGPPG 106

Query: 99  AVGIVRLSGPHAVSIAGRVFRPGRST---------WRPTSHVVEYGVVFDSDGNVIDEVL 149
           AVGIVRLSGP AV +A RVFR  + T         WRP SH VEYG V DS+GNV+DEVL
Sbjct: 107 AVGIVRLSGPKAVEVARRVFRSAKKTKKKESDSDTWRPKSHFVEYGAVVDSNGNVVDEVL 166

Query: 150 AVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLDLS 209
           AVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTC+EAGA LA+PGEFTLRAFLNGRLDLS
Sbjct: 167 AVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCVEAGARLAEPGEFTLRAFLNGRLDLS 226

Query: 210 QAENXXXXXXXXXXXXXXXXXXGIQGGFSSLVRSLRIQCIELLTEIEARLDFDDEMPPLN 269
           QAEN                  GIQGGFSSLV+SLR QCIELLTEIEARLDF+DEMPPL+
Sbjct: 227 QAENVEKLISAKSSAAADAALEGIQGGFSSLVKSLRAQCIELLTEIEARLDFEDEMPPLD 286

Query: 270 LNQIMEKIHNMSRDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSK 322
           +  ++ KI +MS+DVE+AL+TANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSK
Sbjct: 287 IESVINKITSMSQDVESALDTANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSK 339