Miyakogusa Predicted Gene

Lj0g3v0352669.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0352669.1 tr|G8A389|G8A389_MEDTR tRNA modification GTPase
mnmE OS=Medicago truncatula GN=MTR_146s0004 PE=3
SV=,81.75,0,GTP-BINDING PROTEIN ERA HOMOLOG (HERA)(ERA-W)(CONSERVED
ERA-LIKE GTPASE)(CEGA),NULL; MSS1/TRME-RELAT,CUFF.24265.1
         (546 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G78010.1 | Symbols:  | tRNA modification GTPase, putative | c...   677   0.0  
AT3G12080.1 | Symbols: emb2738 | GTP-binding family protein | ch...    86   8e-17
AT3G12080.2 | Symbols: emb2738 | GTP-binding family protein | ch...    86   9e-17
AT5G39960.1 | Symbols:  | GTP binding;GTP binding | chr5:1599419...    61   2e-09

>AT1G78010.1 | Symbols:  | tRNA modification GTPase, putative |
           chr1:29333535-29336297 FORWARD LENGTH=560
          Length = 560

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/520 (66%), Positives = 406/520 (78%), Gaps = 29/520 (5%)

Query: 44  VKPRACSDNHHRSYRVVLNKDERLGERVGH-----NNTTELGNSTTTIAAIVTSLGGPPA 98
           +KPRA S  ++    +V   DER+   VG       +  +   S++TI AIVT +GGPP 
Sbjct: 50  LKPRAQSSENNS---LVFKGDERVVGLVGKVVDDAFDKVDRFQSSSTIVAIVTPIGGPPG 106

Query: 99  AVGIVRLSGPHAVSIAGRVFRPGRST---------WRPTSHVVEYGVVFDSDGNVIDEVL 149
           AVGIVRLSGP AV +A RVFR  + T         WRP SH VEYG V DS+GNV+DEVL
Sbjct: 107 AVGIVRLSGPKAVEVARRVFRSAKKTKKKESDSDTWRPKSHFVEYGAVVDSNGNVVDEVL 166

Query: 150 AVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLDLS 209
           AVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTC+EAGA LA+PGEFTLRAFLNGRLDLS
Sbjct: 167 AVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCVEAGARLAEPGEFTLRAFLNGRLDLS 226

Query: 210 QAENXXXXXXXXXXXXXXXXXXGIQGGFSSLVRSLRIQCIELLTEIEARLDFDDEMPPLN 269
           QAEN                  GIQGGFSSLV+SLR QCIELLTEIEARLDF+DEMPPL+
Sbjct: 227 QAENVEKLISAKSSAAADAALEGIQGGFSSLVKSLRAQCIELLTEIEARLDFEDEMPPLD 286

Query: 270 LNQIMEKIHNMSRDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVT 329
           +  ++ KI +MS+DVE+AL+TANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVT
Sbjct: 287 IESVINKITSMSQDVESALDTANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVT 346

Query: 330 EIAGTTRDVIEASISVNGIPITLLDTAGIRDTDDIVEKIGVERSEAVARGADLIIMTVSA 389
           E+AGTTRDV+EA+++V G+PITLLDTAGIR+T+DIVEKIGVERSE  A+ AD+IIM VSA
Sbjct: 347 EVAGTTRDVVEANVTVRGVPITLLDTAGIRETNDIVEKIGVERSETAAKVADVIIMAVSA 406

Query: 390 VEGWTAEDTKLLERIQSTKESTGSSTPAILVVNKIDCKP---CAETEWDKGCHGHNFFSK 446
           VEGWT EDT+LL +IQS K       P ILV+NKIDC P   C + E  +       F K
Sbjct: 407 VEGWTEEDTELLRKIQSDK-------PMILVMNKIDCAPPGSCDQLEDQR--KKEEVFHK 457

Query: 447 SVFTCAVTGQGLQDLESTVLEMVGLDVVPAGGRRWTVNQRQCEQLVRTKEALSRLQSSIR 506
           SVFT AVTGQG+++LE  +LE++GLD VP GG +WTVNQRQCEQLVRTKEAL RL+ +I 
Sbjct: 458 SVFTSAVTGQGIEELEDAILEILGLDRVPTGGHQWTVNQRQCEQLVRTKEALVRLREAIE 517

Query: 507 EELPLDFWTIDLKDAAMSLGQINGEDISEEVLSNIFGKFC 546
           +E+P+DFWTI+L++AA+SL QI+G+D+SEEVLS+IF KFC
Sbjct: 518 DEIPIDFWTIELREAALSLAQISGQDVSEEVLSSIFAKFC 557


>AT3G12080.1 | Symbols: emb2738 | GTP-binding family protein |
           chr3:3847851-3851980 FORWARD LENGTH=663
          Length = 663

 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 94/175 (53%), Gaps = 24/175 (13%)

Query: 303 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASIS-VNGIPITLLDTAGIRDT 361
           IAI+GRPNVGKSS+LNA  + +R IV+ ++GTTRD I+A  +  +G    L+DTAGIR  
Sbjct: 371 IAIIGRPNVGKSSILNALVREDRTIVSPVSGTTRDAIDAEFTGPDGEKFRLIDTAGIRKK 430

Query: 362 DDIV------EKIGVERSEAVARGADLIIMTVSAVEGWTAEDTKLLERIQSTKESTGSST 415
             +       E + V R+    R +D++ + + A+   T +D K+ ERI+  +E  G   
Sbjct: 431 SSVASSGSTTEAMSVNRAFRAIRRSDVVALVIEAMACITEQDLKIAERIE--REGKG--- 485

Query: 416 PAILVVNKIDCKPCAETEWDKGCHGHN---------FFSKSVFTCAVTGQGLQDL 461
             ++VVNK D  P    E     H  +          ++  V++ A+TG  + ++
Sbjct: 486 -CLVVVNKWDTIPNKNQE--TAAHYEDDVREKLRSLKWAPIVYSTAITGHSVDNI 537



 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 12/185 (6%)

Query: 294 DKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASISVNGIPITLL 353
           + LLQ   ++AIVGRPNVGKS+L N      RAIV +  G TRD +            ++
Sbjct: 155 EHLLQ---RVAIVGRPNVGKSALFNRLVGENRAIVVDEPGVTRDRLYGRSYWGDQEFVVV 211

Query: 354 DTAGIRDTDDIVEKIGVERSEAVARGADLIIMTVSAVEGWTAEDTKLLERIQSTKESTGS 413
           DT G+         +  E + +   G + I   +S+ E   A    ++E+ Q+T  +   
Sbjct: 212 DTGGVMTVSKSPSGVMEELNVSTTIGMEGI--PLSSREAAIARMPSMIEK-QATA-AVDE 267

Query: 414 STPAILVVNKIDCKPCAETE---WDKGCHGHNFFSKSVFTCAVTGQGLQDLESTVLEMVG 470
           S   I VV+       A+ E   W +  + H +   +V  C    +GL  ++++    +G
Sbjct: 268 SAVIIFVVDGQAGPSGADVEIADWLRKYYSHKYIILAVNKCESPRKGL--MQASEFWSLG 325

Query: 471 LDVVP 475
              +P
Sbjct: 326 FTPIP 330


>AT3G12080.2 | Symbols: emb2738 | GTP-binding family protein |
           chr3:3847851-3851677 FORWARD LENGTH=587
          Length = 587

 Score = 85.5 bits (210), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 94/175 (53%), Gaps = 24/175 (13%)

Query: 303 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASIS-VNGIPITLLDTAGIRDT 361
           IAI+GRPNVGKSS+LNA  + +R IV+ ++GTTRD I+A  +  +G    L+DTAGIR  
Sbjct: 371 IAIIGRPNVGKSSILNALVREDRTIVSPVSGTTRDAIDAEFTGPDGEKFRLIDTAGIRKK 430

Query: 362 DDIV------EKIGVERSEAVARGADLIIMTVSAVEGWTAEDTKLLERIQSTKESTGSST 415
             +       E + V R+    R +D++ + + A+   T +D K+ ERI+  +E  G   
Sbjct: 431 SSVASSGSTTEAMSVNRAFRAIRRSDVVALVIEAMACITEQDLKIAERIE--REGKG--- 485

Query: 416 PAILVVNKIDCKPCAETEWDKGCHGHN---------FFSKSVFTCAVTGQGLQDL 461
             ++VVNK D  P    E     H  +          ++  V++ A+TG  + ++
Sbjct: 486 -CLVVVNKWDTIPNKNQE--TAAHYEDDVREKLRSLKWAPIVYSTAITGHSVDNI 537


>AT5G39960.1 | Symbols:  | GTP binding;GTP binding |
           chr5:15994195-15996820 FORWARD LENGTH=621
          Length = 621

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 38/57 (66%)

Query: 301 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASISVNGIPITLLDTAG 357
           LQ+AIVG+PNVGKS+LLNA  + ER +V   AG TRD +       G  + L+DTAG
Sbjct: 318 LQLAIVGKPNVGKSTLLNALLEEERVLVGPEAGLTRDAVRVQFEFQGRTVYLVDTAG 374