Miyakogusa Predicted Gene

Lj0g3v0352549.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0352549.1 Non Chatacterized Hit- tr|B9RHT7|B9RHT7_RICCO
Putative uncharacterized protein OS=Ricinus communis G,56.76,7e-16,
,CUFF.24250.1
         (102 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G16790.1 | Symbols:  | ribosomal protein-related | chr1:57446...    84   3e-17

>AT1G16790.1 | Symbols:  | ribosomal protein-related |
          chr1:5744638-5745072 FORWARD LENGTH=144
          Length = 144

 Score = 83.6 bits (205), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 56/75 (74%), Gaps = 3/75 (4%)

Query: 27 SPRELISHYESQGMETEEASLKVIEDLQKALFGVIFSGR--GKKDKLLTDSSTKMDAVNN 84
          +P ELISHY+ +G+E  EAS+KVIEDLQ AL  V+ S R    KDKL+TD+  K+DA+N 
Sbjct: 26 TPTELISHYQKRGLEPAEASIKVIEDLQNALVRVVSSSRNASSKDKLVTDAR-KIDAING 84

Query: 85 RLNILDMKLDSKPVY 99
          RL ++D KL++KP Y
Sbjct: 85 RLAVVDAKLETKPGY 99