Miyakogusa Predicted Gene

Lj0g3v0352309.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0352309.1 Non Chatacterized Hit- tr|G7LEB1|G7LEB1_MEDTR
Putative uncharacterized protein OS=Medicago truncatul,85.98,0,no
description,ATPase-like, ATP-binding domain; ATPase domain of HSP90
chaperone/DNA topoisomerase I,CUFF.24247.1
         (214 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G48770.1 | Symbols:  | DNA binding;ATP binding | chr3:1807926...   366   e-102
AT4G13750.1 | Symbols: NOV | Histidine kinase-, DNA gyrase B-, a...   118   2e-27
AT3G28020.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...    84   5e-17

>AT3G48770.1 | Symbols:  | DNA binding;ATP binding |
           chr3:18079261-18086817 REVERSE LENGTH=1899
          Length = 1899

 Score =  366 bits (940), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 170/215 (79%), Positives = 195/215 (90%), Gaps = 1/215 (0%)

Query: 1   MAATPKEHVEEIRRYKFSIGGKPNPLTEDLHQAVKNLSAELYAKDVHFLMELIQNAEDNQ 60
           M  + K+H+E IRR KFSIGG  NPLTEDLHQAVKNLSAELYAKDVHFLMELIQNAEDN+
Sbjct: 192 MTESAKQHIERIRRTKFSIGGAENPLTEDLHQAVKNLSAELYAKDVHFLMELIQNAEDNE 251

Query: 61  YPEGVSPALEFIITSEDITDSGAPATLLIFNNEKGFSPRNIESVCSVGRSTKKDSRSSGY 120
           YPEGV P+LEF+ITSEDIT++GAPATLLIFNNEKGFS +NIES+CSVGRSTKK +R  GY
Sbjct: 252 YPEGVDPSLEFVITSEDITNTGAPATLLIFNNEKGFSEKNIESICSVGRSTKKGNRKCGY 311

Query: 121 IGEKGIGFKSVFLVTAQPYIFSNGYQIRFNEKPCPHCSLGYVVPEWVEEKPTLQEIRQIY 180
           IGEKGIGFKSVFL+T+QPYIFSNGYQIRFNE PC HCSLGY+VPEWV++ P+L +I+++Y
Sbjct: 312 IGEKGIGFKSVFLITSQPYIFSNGYQIRFNEAPCSHCSLGYIVPEWVDQHPSLVDIQRMY 371

Query: 181 GKDS-LPTTTIVLPLKSDKVKAVKQQLSSIHPEVL 214
           G  S LPTTTI+LPLKSDKVK VK+QLS++HPEVL
Sbjct: 372 GSGSALPTTTIILPLKSDKVKPVKEQLSNVHPEVL 406


>AT4G13750.1 | Symbols: NOV | Histidine kinase-, DNA gyrase B-, and
            HSP90-like ATPase family protein | chr4:7975191-7987558
            FORWARD LENGTH=2729
          Length = 2729

 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 123/224 (54%), Gaps = 32/224 (14%)

Query: 9    VEEIRRYKFSI----GGKPNPLTEDLH----QAVKNLSAELYAKDVHFLMELIQNAEDNQ 60
            ++ IRR +F +     G    + +  H    +A++ LS ELY++D HF++EL+QNA+DN+
Sbjct: 1162 IDSIRRDEFGLDLTSSGSEMSMLQKQHARLGRALQCLSQELYSQDSHFILELVQNADDNK 1221

Query: 61   YPEGVSPALEFIITSEDITDSGAPATLLIFNNEKGFSPRNIESVCSVGRSTKKDSRSSGY 120
            YPE V P L FI+    I         ++ NNE GF P NI ++C VG+STKK S     
Sbjct: 1222 YPEHVEPTLTFILQKTGI---------VVLNNECGFMPENIRALCDVGQSTKKGSGGY-- 1270

Query: 121  IGEKGIGFKSVFLVTAQPYIFSNGYQIRFNEKPCPHCSLGYVVPEWV-----EEKPTLQE 175
            IG+KGIGFKSVF V+  P I SNG+  +F+        +GY++P  V     E   ++  
Sbjct: 1271 IGKKGIGFKSVFRVSDAPEIHSNGFHFKFD---ISEGQIGYILPTVVPPHDIESLSSMLS 1327

Query: 176  IRQIYGKDSLPTTTIVLPLKS-----DKVKAVKQQLSSIHPEVL 214
             R ++ KD+   T I LP ++       V  ++   S +HP +L
Sbjct: 1328 GRALHLKDAGWNTCITLPFRAIDSERTTVNHIEPMFSDLHPSLL 1371


>AT3G28020.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: DNA binding;ATP binding (TAIR:AT3G48770.1); Has 66
           Blast hits to 55 proteins in 9 species: Archae - 0;
           Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr3:10417906-10419149 REVERSE LENGTH=246
          Length = 246

 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 37/59 (62%), Positives = 53/59 (89%), Gaps = 1/59 (1%)

Query: 156 HCSLGYVVPEWVEEKPTLQEIRQIYGKDS-LPTTTIVLPLKSDKVKAVKQQLSSIHPEV 213
           +C+LGY+VPEWVE++P+L +I++I G  S +PTTTI++PLKSDKVK VK+QLS++HPE+
Sbjct: 36  NCNLGYIVPEWVEKRPSLVDIQKINGFGSAIPTTTIIMPLKSDKVKPVKEQLSNVHPEI 94



 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/36 (61%), Positives = 27/36 (75%)

Query: 1  MAATPKEHVEEIRRYKFSIGGKPNPLTEDLHQAVKN 36
          MA + K+H++ IR  KFSIG   NPLTEDLHQA +N
Sbjct: 1  MAESTKQHIDLIRETKFSIGRAYNPLTEDLHQAHRN 36