Miyakogusa Predicted Gene

Lj0g3v0352109.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0352109.1 tr|C7J0T0|C7J0T0_ORYSJ Os04g0376600 protein
(Fragment) OS=Oryza sativa subsp. japonica
GN=Os04g03766,57.3,3e-19,seg,NULL,CUFF.24566.1
         (185 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G48720.1 | Symbols: XRI, XRI1 | x-ray induced transcript 1 | ...   179   7e-46
AT5G48720.2 | Symbols: XRI, XRI1 | x-ray induced transcript 1 | ...   179   1e-45
AT2G01990.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    64   8e-11
AT1G14630.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    59   2e-09

>AT5G48720.1 | Symbols: XRI, XRI1 | x-ray induced transcript 1 |
           chr5:19760038-19761621 FORWARD LENGTH=266
          Length = 266

 Score =  179 bits (455), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 92/154 (59%), Positives = 114/154 (74%), Gaps = 4/154 (2%)

Query: 32  EGWLAEYFNDTDMQLSPDDLNFTGADDVHIDIAELSDIPPSQEQHMVQKRVTVTRTPKNI 91
           E W A+  ND +  + PDDLNF G+ DV +DI+E  ++PP  E   VQ+   VTR+  N+
Sbjct: 117 EEWYADCLNDAETPMLPDDLNF-GSPDVQVDISEYLNVPPETETREVQR--PVTRSSPNV 173

Query: 92  IFKGRKSFIRTPTKLASTVAYPFAFIKPSGAHGDVTLKEINQRIRTPPPSKSKQNSEDPS 151
           IFKGRKSF R  +KL S++ YPFAFIKP G HG +TLK+INQ+IR  PP+K K + E+P+
Sbjct: 174 IFKGRKSFSRPVSKLPSSIIYPFAFIKPCGVHGGMTLKDINQKIRN-PPAKPKAHIEEPA 232

Query: 152 AYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 185
               SAFSGKPVVGKTKIRTEGGKGSITIMRT+G
Sbjct: 233 VIQTSAFSGKPVVGKTKIRTEGGKGSITIMRTRG 266


>AT5G48720.2 | Symbols: XRI, XRI1 | x-ray induced transcript 1 |
           chr5:19759233-19761621 FORWARD LENGTH=300
          Length = 300

 Score =  179 bits (454), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 92/154 (59%), Positives = 114/154 (74%), Gaps = 4/154 (2%)

Query: 32  EGWLAEYFNDTDMQLSPDDLNFTGADDVHIDIAELSDIPPSQEQHMVQKRVTVTRTPKNI 91
           E W A+  ND +  + PDDLNF G+ DV +DI+E  ++PP  E   VQ+   VTR+  N+
Sbjct: 151 EEWYADCLNDAETPMLPDDLNF-GSPDVQVDISEYLNVPPETETREVQR--PVTRSSPNV 207

Query: 92  IFKGRKSFIRTPTKLASTVAYPFAFIKPSGAHGDVTLKEINQRIRTPPPSKSKQNSEDPS 151
           IFKGRKSF R  +KL S++ YPFAFIKP G HG +TLK+INQ+IR  PP+K K + E+P+
Sbjct: 208 IFKGRKSFSRPVSKLPSSIIYPFAFIKPCGVHGGMTLKDINQKIRN-PPAKPKAHIEEPA 266

Query: 152 AYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 185
               SAFSGKPVVGKTKIRTEGGKGSITIMRT+G
Sbjct: 267 VIQTSAFSGKPVVGKTKIRTEGGKGSITIMRTRG 300


>AT2G01990.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G14630.1); Has 118 Blast hits to 118 proteins
           in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0;
           Fungi - 0; Plants - 118; Viruses - 0; Other Eukaryotes -
           0 (source: NCBI BLink). | chr2:465197-466497 REVERSE
           LENGTH=213
          Length = 213

 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 6/86 (6%)

Query: 105 KLASTVAYPFAFIKPSGAHGDVTLKEINQRIRTPPPSKSKQNSEDPSAYPKSA-----FS 159
           +L + + YPF  +KP G   DVTL +IN+RI   P    +    D ++ P  +      S
Sbjct: 129 RLITKLVYPFGLVKPGGRENDVTLNDINERILMAPSRPIRHPVGDFASRPCVSGRGPGLS 188

Query: 160 GKPVVGKTKIRTEGGKGSITIMRTKG 185
           GK VV  TKI+T+ G+G+ITI+RTKG
Sbjct: 189 GKAVVALTKIQTQ-GRGTITIIRTKG 213


>AT1G14630.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT2G01990.1); Has 125 Blast hits to 123 proteins
           in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0;
           Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes -
           0 (source: NCBI BLink). | chr1:5019995-5021445 FORWARD
           LENGTH=226
          Length = 226

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 46/81 (56%), Gaps = 6/81 (7%)

Query: 110 VAYPFAFIKPSGAHGDVTLKEINQRIRTPPPSKSKQNSEDPSAYPKSA-----FSGKPVV 164
           V YPF  +KP G   D+TL +IN+RI  P     +    D +  P  +      SGK VV
Sbjct: 147 VVYPFGVVKPGGREEDITLNDINKRILMPSARPVRHPVGDFACRPCVSADGPGLSGKAVV 206

Query: 165 GKTKIRTEGGKGSITIMRTKG 185
             TKI+T  G+G+ITI+RTKG
Sbjct: 207 AFTKIQTL-GRGTITIIRTKG 226