Miyakogusa Predicted Gene

Lj0g3v0351909.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0351909.1 tr|I7KMR5|I7KMR5_MARPO NDH subunit PnsB4
OS=Marchantia polymorpha GN=pnsb4 PE=4 SV=1,48.28,6e-18,seg,NULL;
coiled-coil,NULL,CUFF.24202.1
         (186 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G18730.3 | Symbols: NDF6 | NDH dependent flow 6 | chr1:646062...   166   8e-42
AT1G18730.1 | Symbols: NDF6 | NDH dependent flow 6 | chr1:646062...   166   1e-41
AT1G18730.4 | Symbols: NDF6 | NDH dependent flow 6 | chr1:646062...   146   6e-36
AT1G18730.2 | Symbols: NDF6 | NDH dependent flow 6 | chr1:646062...   146   8e-36

>AT1G18730.3 | Symbols: NDF6 | NDH dependent flow 6 |
           chr1:6460625-6462107 FORWARD LENGTH=174
          Length = 174

 Score =  166 bits (420), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 94/187 (50%), Positives = 106/187 (56%), Gaps = 19/187 (10%)

Query: 1   MAEAIMGFTVFKSHIHCSCLQTKRFDVNPSSRLPKLHSNSTLFHRSW-----QVFESKCK 55
           MAEA   FT    HI             PSS       NS   H  W     +  E    
Sbjct: 1   MAEAFTSFTFTNLHI-------------PSSYNHSPKQNSGPNHGYWLSNVNEKRERNLM 47

Query: 56  RASLCKVNALP-DWPLMAILVEQMEGQRDMITEKTIWHLSDGQIKNVYSWYIMFTVWGCL 114
           R SLC   ALP D PLMA++V+Q+EG RD+ITEK +WHLSD  IKNVY +YIMFT WGCL
Sbjct: 48  RGSLCVRKALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCL 107

Query: 115 VFGSMKDPYYDSETYRGDGGDGTGNWIYEKQEIMXXXXXXXXXXXXXXXXXXQKVGGLKE 174
            FGS KDP+YDSE YRGDGGDGTG W+YE QE +                  QKVGGL+E
Sbjct: 108 YFGSAKDPFYDSEEYRGDGGDGTGYWVYETQEDIEEKARAELWREELIEEIEQKVGGLRE 167

Query: 175 LEEVSTK 181
           LEE  TK
Sbjct: 168 LEEAVTK 174


>AT1G18730.1 | Symbols: NDF6 | NDH dependent flow 6 |
           chr1:6460625-6462107 FORWARD LENGTH=175
          Length = 175

 Score =  166 bits (419), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 94/188 (50%), Positives = 106/188 (56%), Gaps = 20/188 (10%)

Query: 1   MAEAIMGFTVFKSHIHCSCLQTKRFDVNPSSRLPKLHSNSTLFHRSW------QVFESKC 54
           MAEA   FT    HI             PSS       NS   H  W      +  E   
Sbjct: 1   MAEAFTSFTFTNLHI-------------PSSYNHSPKQNSGPNHGYWLSKNVNEKRERNL 47

Query: 55  KRASLCKVNALP-DWPLMAILVEQMEGQRDMITEKTIWHLSDGQIKNVYSWYIMFTVWGC 113
            R SLC   ALP D PLMA++V+Q+EG RD+ITEK +WHLSD  IKNVY +YIMFT WGC
Sbjct: 48  MRGSLCVRKALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGC 107

Query: 114 LVFGSMKDPYYDSETYRGDGGDGTGNWIYEKQEIMXXXXXXXXXXXXXXXXXXQKVGGLK 173
           L FGS KDP+YDSE YRGDGGDGTG W+YE QE +                  QKVGGL+
Sbjct: 108 LYFGSAKDPFYDSEEYRGDGGDGTGYWVYETQEDIEEKARAELWREELIEEIEQKVGGLR 167

Query: 174 ELEEVSTK 181
           ELEE  TK
Sbjct: 168 ELEEAVTK 175


>AT1G18730.4 | Symbols: NDF6 | NDH dependent flow 6 |
           chr1:6460625-6461464 FORWARD LENGTH=161
          Length = 161

 Score =  146 bits (369), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 80/149 (53%), Positives = 90/149 (60%), Gaps = 19/149 (12%)

Query: 1   MAEAIMGFTVFKSHIHCSCLQTKRFDVNPSSRLPKLHSNSTLFHRSW-----QVFESKCK 55
           MAEA   FT    HI             PSS       NS   H  W     +  E    
Sbjct: 1   MAEAFTSFTFTNLHI-------------PSSYNHSPKQNSGPNHGYWLSNVNEKRERNLM 47

Query: 56  RASLCKVNALP-DWPLMAILVEQMEGQRDMITEKTIWHLSDGQIKNVYSWYIMFTVWGCL 114
           R SLC   ALP D PLMA++V+Q+EG RD+ITEK +WHLSD  IKNVY +YIMFT WGCL
Sbjct: 48  RGSLCVRKALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCL 107

Query: 115 VFGSMKDPYYDSETYRGDGGDGTGNWIYE 143
            FGS KDP+YDSE YRGDGGDGTG W+YE
Sbjct: 108 YFGSAKDPFYDSEEYRGDGGDGTGYWVYE 136


>AT1G18730.2 | Symbols: NDF6 | NDH dependent flow 6 |
           chr1:6460625-6461849 FORWARD LENGTH=138
          Length = 138

 Score =  146 bits (369), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 80/149 (53%), Positives = 90/149 (60%), Gaps = 19/149 (12%)

Query: 1   MAEAIMGFTVFKSHIHCSCLQTKRFDVNPSSRLPKLHSNSTLFHRSW-----QVFESKCK 55
           MAEA   FT    HI             PSS       NS   H  W     +  E    
Sbjct: 1   MAEAFTSFTFTNLHI-------------PSSYNHSPKQNSGPNHGYWLSNVNEKRERNLM 47

Query: 56  RASLCKVNALP-DWPLMAILVEQMEGQRDMITEKTIWHLSDGQIKNVYSWYIMFTVWGCL 114
           R SLC   ALP D PLMA++V+Q+EG RD+ITEK +WHLSD  IKNVY +YIMFT WGCL
Sbjct: 48  RGSLCVRKALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCL 107

Query: 115 VFGSMKDPYYDSETYRGDGGDGTGNWIYE 143
            FGS KDP+YDSE YRGDGGDGTG W+YE
Sbjct: 108 YFGSAKDPFYDSEEYRGDGGDGTGYWVYE 136