Miyakogusa Predicted Gene

Lj0g3v0351649.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0351649.1 Non Chatacterized Hit- tr|D7KPV0|D7KPV0_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,52.94,9e-19,DUF2040,Domain of unknown function DUF2040; INNER
MEMBRANE PROTEIN,NULL; coiled-coil,NULL; seg,NULL,CUFF.24166.1
         (172 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G27285.1 | Symbols:  | Coiled-coil domain-containing protein ...   123   8e-29
AT2G27280.1 | Symbols:  | Coiled-coil domain-containing protein ...   107   4e-24
AT1G55928.1 | Symbols:  | Coiled-coil domain-containing protein ...    90   6e-19

>AT2G27285.1 | Symbols:  | Coiled-coil domain-containing protein 55
           (DUF2040) | chr2:11676079-11677897 REVERSE LENGTH=323
          Length = 323

 Score =  123 bits (308), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 63/116 (54%), Positives = 83/116 (71%), Gaps = 1/116 (0%)

Query: 1   MKEKVAKPLIQDREERKPKYIQNLIKKAKEREQYREIVYEKKIAMERDKDDHLYADKDKY 60
           MK+K   P +QDREERKP+YIQNL+K+A+ RE+  EIVYE+K+A ER+KD+HL++DK+K+
Sbjct: 78  MKQKAVLPRMQDREERKPRYIQNLMKQAERREKEHEIVYERKLAKEREKDEHLFSDKEKF 137

Query: 61  VTEAYRRKLAXXXXXXXXXXXXXXXXXXDDVTKKKDFLLDFYSNLDKNVAYGAKDA 116
           VT AY+RKL                   DDVTKKKD L DFY N+ KNVA+GA++ 
Sbjct: 138 VTGAYKRKLEEQKKWLAEERLRELREERDDVTKKKD-LSDFYFNIGKNVAFGAREV 192


>AT2G27280.1 | Symbols:  | Coiled-coil domain-containing protein 55
           (DUF2040) | chr2:11673826-11675613 REVERSE LENGTH=427
          Length = 427

 Score =  107 bits (267), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 57/119 (47%), Positives = 80/119 (67%), Gaps = 1/119 (0%)

Query: 1   MKEKVAKPLIQDREERKPKYIQNLIKKAKEREQYREIVYEKKIAMERDKDDHLYADKDKY 60
           +K + A P +QDREE K +YIQ+++K+A+ RE+  EIVYE+K+A ER KD+HLY+DK+K+
Sbjct: 220 IKHEAALPRMQDREEHKSRYIQHIMKQAERREKEHEIVYERKLAKERAKDEHLYSDKEKF 279

Query: 61  VTEAYRRKLAXXXXXXXXXXXXXXXXXXDDVTKKKDFLLDFYSNLDKNVAYGAKDAQGR 119
           VT  ++RKL                   DDVTKK D L +FY N+ KNVA+GA+D + R
Sbjct: 280 VTGPFKRKLEEQKKWLEEERLRELREERDDVTKKND-LSEFYINIGKNVAFGARDIEAR 337


>AT1G55928.1 | Symbols:  | Coiled-coil domain-containing protein 55
           (DUF2040) | chr1:20917471-20918367 FORWARD LENGTH=298
          Length = 298

 Score = 90.1 bits (222), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 58/135 (42%), Positives = 81/135 (60%), Gaps = 3/135 (2%)

Query: 2   KEKVAKPLIQDREE-RKPKYIQNLIKKAKEREQYREIVYEKKIAMERDKDDHLYADKDKY 60
           K++   P + +R+E  KP Y Q + +KA  R++ REIVYE+K+A ER K+ HL+ D+ K 
Sbjct: 85  KQEAPLPRLHERQECNKPIYNQLMKEKADRRQKEREIVYERKLAKERAKEQHLFPDQVKV 144

Query: 61  VTEAYRRKLAXXXXXXXXXXXXXXXXXXDDVTKKKDFLLDFYSNLDKNVAYGAKDAQGRK 120
           VT +Y+RKL                   DDVTKKKD L DFY N+ KNVA+GA+D + R+
Sbjct: 145 VTGSYKRKLEERDQWLSEERLRELGEEKDDVTKKKD-LSDFYFNIGKNVAFGARDIKARE 203

Query: 121 RDNQAEHR-VPETHE 134
            +   E R VP+  E
Sbjct: 204 TERLKEQRKVPKLEE 218