Miyakogusa Predicted Gene

Lj0g3v0351109.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0351109.1 Non Chatacterized Hit- tr|Q8W4K0|Q8W4K0_ARATH
Putative uncharacterized protein At4g14190
OS=Arabidop,37.82,0.0000000000004,seg,NULL; ZINC_FINGER_C2H2_1,Zinc
finger, C2H2,CUFF.24129.1
         (764 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14200.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    83   9e-16

>AT4G14200.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:8185524-8188667 REVERSE
           LENGTH=784
          Length = 784

 Score = 82.8 bits (203), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 72/119 (60%), Gaps = 8/119 (6%)

Query: 1   MDNQDYRTTHTQGDETHHVCHRCGWPFPNPHPSSKHRRAHKKICGTIQGFKLLISESETQ 60
           MD+QD+  +++ G   +HVC +CGW + NPHPS+K+RRAHKKICGTI+GF++  SE + +
Sbjct: 1   MDSQDH-CSNSPGGGKNHVCTKCGWSYSNPHPSAKNRRAHKKICGTIKGFEIFDSEMKKE 59

Query: 61  THSNASDD--DDDRNTNTQGLNALDTSK---IDKGCDGSGGSLIRSGDEVFLDAIANFS 114
                 +   DD++   T     ++ S    ++K  +   G +  S ++VF DA+  FS
Sbjct: 60  NLDLPEEHSLDDEQKPPTPSPTVVEKSAPTVVEKAANERIGDV--SEEDVFTDAVCEFS 116



 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 24/33 (72%)

Query: 723 KEWSSPGRNPAGNKTQSKKVKSRPYWLQFVCCS 755
           +EW+SP + P   K + KKVK RP+W+ FVCCS
Sbjct: 749 EEWNSPAKYPVDLKREEKKVKGRPFWVPFVCCS 781