Miyakogusa Predicted Gene

Lj0g3v0351029.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0351029.1 Non Chatacterized Hit- tr|I3SVG7|I3SVG7_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.96,0,no
description,NULL; ClpP/crotonase,NULL; LAMBDA-CRYSTALLIN HOMOLOG
[SOURCE:UNIPROTKB/SWISS-PROT,AC,CUFF.24314.1
         (386 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G06550.1 | Symbols:  | ATP-dependent caseinolytic (Clp) prote...   572   e-163
AT5G65940.1 | Symbols: CHY1 | beta-hydroxyisobutyryl-CoA hydrola...   312   2e-85
AT2G30660.1 | Symbols:  | ATP-dependent caseinolytic (Clp) prote...   293   2e-79
AT2G30650.1 | Symbols:  | ATP-dependent caseinolytic (Clp) prote...   290   8e-79
AT5G65940.3 | Symbols: CHY1 | beta-hydroxyisobutyryl-CoA hydrola...   290   1e-78
AT3G60510.1 | Symbols:  | ATP-dependent caseinolytic (Clp) prote...   276   1e-74
AT4G31810.1 | Symbols:  | ATP-dependent caseinolytic (Clp) prote...   275   3e-74
AT5G65940.2 | Symbols: CHY1 | beta-hydroxyisobutyryl-CoA hydrola...   275   4e-74
AT3G60510.3 | Symbols:  | ATP-dependent caseinolytic (Clp) prote...   263   1e-70
AT3G60510.2 | Symbols:  | ATP-dependent caseinolytic (Clp) prote...   207   1e-53
AT4G13360.1 | Symbols:  | ATP-dependent caseinolytic (Clp) prote...   178   5e-45
AT3G24360.2 | Symbols:  | ATP-dependent caseinolytic (Clp) prote...   172   5e-43
AT3G24360.1 | Symbols:  | ATP-dependent caseinolytic (Clp) prote...   164   1e-40
AT5G43280.1 | Symbols: ATDCI1, DCI1 | delta(3,5),delta(2,4)-dien...    63   4e-10
AT5G43280.2 | Symbols: ATDCI1, DCI1 | delta(3,5),delta(2,4)-dien...    62   5e-10
AT4G16210.1 | Symbols: ECHIA, E-COAH-2 | enoyl-CoA hydratase/iso...    59   5e-09
AT4G16800.1 | Symbols:  | ATP-dependent caseinolytic (Clp) prote...    59   6e-09
AT1G60550.1 | Symbols: ECHID, DHNS | enoyl-CoA hydratase/isomera...    53   3e-07

>AT1G06550.1 | Symbols:  | ATP-dependent caseinolytic (Clp)
           protease/crotonase family protein | chr1:2003834-2006564
           REVERSE LENGTH=387
          Length = 387

 Score =  572 bits (1475), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 272/374 (72%), Positives = 322/374 (86%), Gaps = 1/374 (0%)

Query: 11  EQVVLGEEIDHVRLITLNRPKQLNAISPELVSLLAAYLEKWEKDDEAYLIIIKGAGRAFC 70
           E VV+GEE   VRL TLNRP+QLN ISPE+V  LA YLE WEKDD+  LI+IKG GRAF 
Sbjct: 10  EPVVIGEEKGSVRLTTLNRPRQLNVISPEVVFKLAEYLELWEKDDQTKLILIKGTGRAFS 69

Query: 71  AGGDLRVFYDGRKTKDSCLEVVYRFYWLCYHIKTYKKTQVALVHGISMGGGAALMAPMKF 130
           AGGDL+VFY G+++KDSCLEVVYR YWLCYHI TYKKTQV+LV+GISMGGGAALM PMKF
Sbjct: 70  AGGDLKVFYHGQESKDSCLEVVYRMYWLCYHIHTYKKTQVSLVNGISMGGGAALMVPMKF 129

Query: 131 SVVTEKTVFATPEASFGFHTDCGFSYNHSRLPGHLGEYLALSGARLNGKELVAAGLATHF 190
           SVVTEKTVFATPEASFGFHTDCGFSY HSRLPGHLGE+LAL+GARLNGKELVA G+ATHF
Sbjct: 130 SVVTEKTVFATPEASFGFHTDCGFSYIHSRLPGHLGEFLALTGARLNGKELVAIGMATHF 189

Query: 191 VSSEQIDELEKRLISLNSGDENAVRSVIEEFSLEVKIDEESILNKKSIIDECFSKDSVEE 250
           V S ++ +LE RL+SL+SGD + V+S IEEFS +V +D++SILNK+S+I+ECFSK+SV++
Sbjct: 190 VPSGKLMDLEARLVSLDSGDADVVQSTIEEFSEKVNLDKDSILNKQSVINECFSKESVKQ 249

Query: 251 IIKSLETEAQKEGNGWIGAVLKGMKRSSPTALKIALRSVREGRNQTLSECLKKEFGLTIN 310
           II++ E EA K+GN WI  V+KG+KRSSPT LKI L+S+REGR QTLS+CLKKEF LT+N
Sbjct: 250 IIQAFEAEASKDGNEWITPVIKGLKRSSPTGLKIVLQSIREGRKQTLSDCLKKEFRLTLN 309

Query: 311 ILRTVISEDMYEGIRALTIDKDNSPKWEPPSLDKVEDGKLDLIFQPF-DKDLELQIPERE 369
           ILR  IS DMYEGIRALTIDKDNSPKW P +LD+V+D K++ +F+ F D D+ELQIPE E
Sbjct: 310 ILRKTISPDMYEGIRALTIDKDNSPKWNPATLDEVDDEKINSVFKLFEDDDIELQIPETE 369

Query: 370 ENRWDGRYESSAYA 383
           ENRW G+YE+S YA
Sbjct: 370 ENRWGGKYETSGYA 383


>AT5G65940.1 | Symbols: CHY1 | beta-hydroxyisobutyryl-CoA hydrolase
           1 | chr5:26376830-26379161 REVERSE LENGTH=378
          Length = 378

 Score =  312 bits (800), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 153/357 (42%), Positives = 230/357 (64%), Gaps = 2/357 (0%)

Query: 14  VLGEEIDHVRLITLNRPKQLNAISPELVSLLAAYLEKWEKDDEAYLIIIKGAGRAFCAGG 73
           VL EE   VR++TLNRPKQLNA+S  ++S L      +E+D    L+I+KG GRAFCAGG
Sbjct: 11  VLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGG 70

Query: 74  DLRVFYDGRKTKDSCLEVVY--RFYWLCYHIKTYKKTQVALVHGISMGGGAALMAPMKFS 131
           D+          +  L   Y    Y L Y + TY K QV++++GI MGGGA +    +F 
Sbjct: 71  DVAAVVRDINQGNWRLGANYFSSEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFR 130

Query: 132 VVTEKTVFATPEASFGFHTDCGFSYNHSRLPGHLGEYLALSGARLNGKELVAAGLATHFV 191
           + TE TVFA PE + G   D G SY  SRLPG  GEY+ L+GARL+G E++A GLATHFV
Sbjct: 131 IATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATHFV 190

Query: 192 SSEQIDELEKRLISLNSGDENAVRSVIEEFSLEVKIDEESILNKKSIIDECFSKDSVEEI 251
            S ++  LE  L  +NS D     ++++ ++   ++ ++S   +  +ID CFS+ +VEEI
Sbjct: 191 PSTRLTALEADLCRINSNDPTFASTILDAYTQHPRLKQQSAYRRLDVIDRCFSRRTVEEI 250

Query: 252 IKSLETEAQKEGNGWIGAVLKGMKRSSPTALKIALRSVREGRNQTLSECLKKEFGLTINI 311
           I +LE EA +E +GWI A ++ +K+ SP +LKI+LRS+REGR Q + +CL +E+ +  ++
Sbjct: 251 ISALEREATQEADGWISATIQALKKGSPASLKISLRSIREGRLQGVGQCLIREYRMVCHV 310

Query: 312 LRTVISEDMYEGIRALTIDKDNSPKWEPPSLDKVEDGKLDLIFQPFDKDLELQIPER 368
           ++  IS+D  EG RA+ +DKD +PKWEP  L+ ++D  ++  F+  +++ +L++P R
Sbjct: 311 MKGEISKDFVEGCRAILVDKDKNPKWEPRRLEDMKDSMVEQYFERVEREDDLKLPPR 367


>AT2G30660.1 | Symbols:  | ATP-dependent caseinolytic (Clp)
           protease/crotonase family protein |
           chr2:13058500-13061665 REVERSE LENGTH=378
          Length = 378

 Score =  293 bits (749), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 149/343 (43%), Positives = 220/343 (64%), Gaps = 2/343 (0%)

Query: 14  VLGEEIDHVRLITLNRPKQLNAISPELVSLLAAYLEKWEKDDEAYLIIIKGAGRAFCAGG 73
           VL EE   VR++TLNRPKQLNA+   ++S L      +E+D    L+I+KG GRAFCAGG
Sbjct: 7   VLVEEKSSVRILTLNRPKQLNALCFNMISRLLQLFRAYEEDPSVKLVILKGQGRAFCAGG 66

Query: 74  DLR-VFYDGRKTKDSCLEVVYR-FYWLCYHIKTYKKTQVALVHGISMGGGAALMAPMKFS 131
           D+  V  +  + K       +R  Y L Y + TY K QV++++GI MG GA +    +F 
Sbjct: 67  DVPPVVQNMVQGKWRLGADFFRDQYTLNYVMATYSKPQVSILNGIVMGAGAGVSIHGRFR 126

Query: 132 VVTEKTVFATPEASFGFHTDCGFSYNHSRLPGHLGEYLALSGARLNGKELVAAGLATHFV 191
           + TE TVFA PE S G   D G SY  SRLPG  GEY+ L+GARL+G EL+A GLATHFV
Sbjct: 127 IATENTVFAMPETSLGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAELLACGLATHFV 186

Query: 192 SSEQIDELEKRLISLNSGDENAVRSVIEEFSLEVKIDEESILNKKSIIDECFSKDSVEEI 251
            S ++  LE  L  + S D + V ++++ ++    + ++S  ++  +ID CFSK ++EEI
Sbjct: 187 PSTRLTALETDLCKVGSSDPSFVSTILDAYTQHPHLKQKSAYHRLDVIDRCFSKRTMEEI 246

Query: 252 IKSLETEAQKEGNGWIGAVLKGMKRSSPTALKIALRSVREGRNQTLSECLKKEFGLTINI 311
           I +LE E  +E + W    ++ +K+SSP++LKI+LRS+REGR Q +  CL +E+ +  ++
Sbjct: 247 ISALERETTQELDDWSLTTIRALKKSSPSSLKISLRSIREGRLQGVGHCLTREYRMVCHV 306

Query: 312 LRTVISEDMYEGIRALTIDKDNSPKWEPPSLDKVEDGKLDLIF 354
           ++  +S+D+ EG RA+ IDKD +PKWEP  L+ ++D  +D  F
Sbjct: 307 MKGDLSKDLVEGCRAILIDKDRNPKWEPRRLEDMKDSMVDQFF 349


>AT2G30650.1 | Symbols:  | ATP-dependent caseinolytic (Clp)
           protease/crotonase family protein |
           chr2:13053777-13056315 REVERSE LENGTH=378
          Length = 378

 Score =  290 bits (743), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 147/350 (42%), Positives = 223/350 (63%), Gaps = 7/350 (2%)

Query: 10  HEQVVLGEEIDHVRLITLNRPKQLNAISPELVSLLAAYLEKWEKDDEAYLIIIKGAGRAF 69
           H QV++ EE   VR++T NRPKQLNA+S  +VS L      +E+D    L+++KG GRAF
Sbjct: 4   HSQVLV-EEKSSVRILTFNRPKQLNALSFHMVSRLLQLFLAYEEDPSVKLVVLKGQGRAF 62

Query: 70  CAGGDL----RVFYDGRKTKDSCLEVVYRFYWLCYHIKTYKKTQVALVHGISMGGGAALM 125
            AGGD+    R    G+  + +    V   Y L Y + TY+K QV++++GI MGGGA L 
Sbjct: 63  SAGGDIPPIVRDILQGKLIRGAHYFKVG--YTLNYVLSTYRKPQVSILNGIVMGGGAGLS 120

Query: 126 APMKFSVVTEKTVFATPEASFGFHTDCGFSYNHSRLPGHLGEYLALSGARLNGKELVAAG 185
              +F + TE TVFA PE + G   D G SY  SRLPG  GEY+ L+GARL+G E++A G
Sbjct: 121 TNGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACG 180

Query: 186 LATHFVSSEQIDELEKRLISLNSGDENAVRSVIEEFSLEVKIDEESILNKKSIIDECFSK 245
           LATHFV S  +  LE  L  + S ++  + ++++ ++    +++ S  ++  +ID CFSK
Sbjct: 181 LATHFVPSISLTALEAELYKVGSSNQTFISTILDAYAEYPHLNQHSSYHRLDVIDRCFSK 240

Query: 246 DSVEEIIKSLETEAQKEGNGWIGAVLKGMKRSSPTALKIALRSVREGRNQTLSECLKKEF 305
            +VEEI  +LE E  ++ N W+ A ++ ++++SP+ LKI+LRS+REGR Q + +CL +E+
Sbjct: 241 RTVEEIFSALEREVTQKPNDWLLATIQALEKASPSCLKISLRSIREGRLQGVGQCLIREY 300

Query: 306 GLTINILRTVISEDMYEGIRALTIDKDNSPKWEPPSLDKVEDGKLDLIFQ 355
            +  ++++  IS+D  EG RA+ IDKD +PKW+P  L+ V D  +D  F+
Sbjct: 301 RMVCHVMKGDISKDFVEGCRAVLIDKDRNPKWQPRRLEDVTDSMVDQYFE 350


>AT5G65940.3 | Symbols: CHY1 | beta-hydroxyisobutyryl-CoA hydrolase
           1 | chr5:26376927-26379161 REVERSE LENGTH=342
          Length = 342

 Score =  290 bits (742), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 144/325 (44%), Positives = 209/325 (64%), Gaps = 2/325 (0%)

Query: 14  VLGEEIDHVRLITLNRPKQLNAISPELVSLLAAYLEKWEKDDEAYLIIIKGAGRAFCAGG 73
           VL EE   VR++TLNRPKQLNA+S  ++S L      +E+D    L+I+KG GRAFCAGG
Sbjct: 11  VLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGG 70

Query: 74  DLRVFYDGRKTKDSCLEVVY--RFYWLCYHIKTYKKTQVALVHGISMGGGAALMAPMKFS 131
           D+          +  L   Y    Y L Y + TY K QV++++GI MGGGA +    +F 
Sbjct: 71  DVAAVVRDINQGNWRLGANYFSSEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFR 130

Query: 132 VVTEKTVFATPEASFGFHTDCGFSYNHSRLPGHLGEYLALSGARLNGKELVAAGLATHFV 191
           + TE TVFA PE + G   D G SY  SRLPG  GEY+ L+GARL+G E++A GLATHFV
Sbjct: 131 IATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATHFV 190

Query: 192 SSEQIDELEKRLISLNSGDENAVRSVIEEFSLEVKIDEESILNKKSIIDECFSKDSVEEI 251
            S ++  LE  L  +NS D     ++++ ++   ++ ++S   +  +ID CFS+ +VEEI
Sbjct: 191 PSTRLTALEADLCRINSNDPTFASTILDAYTQHPRLKQQSAYRRLDVIDRCFSRRTVEEI 250

Query: 252 IKSLETEAQKEGNGWIGAVLKGMKRSSPTALKIALRSVREGRNQTLSECLKKEFGLTINI 311
           I +LE EA +E +GWI A ++ +K+ SP +LKI+LRS+REGR Q + +CL +E+ +  ++
Sbjct: 251 ISALEREATQEADGWISATIQALKKGSPASLKISLRSIREGRLQGVGQCLIREYRMVCHV 310

Query: 312 LRTVISEDMYEGIRALTIDKDNSPK 336
           ++  IS+D  EG RA+ +DKD +PK
Sbjct: 311 MKGEISKDFVEGCRAILVDKDKNPK 335


>AT3G60510.1 | Symbols:  | ATP-dependent caseinolytic (Clp)
           protease/crotonase family protein |
           chr3:22357141-22360003 REVERSE LENGTH=401
          Length = 401

 Score =  276 bits (707), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 148/352 (42%), Positives = 222/352 (63%), Gaps = 5/352 (1%)

Query: 23  RLITLNRPKQLNAISPELVSLLAAYLEKWEKDDEAYLIIIKGAGRAFCAGGDLRVFYD-- 80
           R   LNRP  LNA++  +   L    + WE+D     +++KG+GRAFCAGGD+   Y   
Sbjct: 48  RTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLR 107

Query: 81  GRKTKDSCLEVVYRFYWLCYHIKTYKKTQVALVHGISMGGGAALMAPMKFSVVTEKTVFA 140
            R + D+  E     Y   Y + TY K  VA+++G++MGGG  +  P  F V T++T+FA
Sbjct: 108 TRGSPDAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFA 167

Query: 141 TPEASFGFHTDCGFSYNHSRLPGHLGEYLALSGARLNGKELVAAGLATHFVSSEQIDELE 200
           TPE   GFH D G S+N S LPG LGEYL L+G +L+G E++A GLATH++ SE++  +E
Sbjct: 168 TPETIIGFHPDAGASFNLSHLPGRLGEYLGLTGLKLSGAEMLACGLATHYIRSEEVPVME 227

Query: 201 KRLISLNSGDENAVRSVIEEFSLEVKIDEESILNKKSIIDECFSKDSVEEIIKSLETEAQ 260
           ++L  L + D + V S +E+ +     ++  ++ +  ++++CFS D+VEEII SLE EA 
Sbjct: 228 EQLKKLLTDDPSVVESCLEKCAEVAHPEKTGVIRRIDLLEKCFSHDTVEEIIDSLEIEAS 287

Query: 261 KEGNGWIGAVLKGMKRSSPTALKIALRSVREGRNQTLSECLKKEFGLTINILRTVISEDM 320
           +  + W    L+ +K SSP +LK+ALRS+REGR QTL +CL +E+ +++  L   +S + 
Sbjct: 288 RRKDTWCITTLRRLKESSPLSLKVALRSIREGRLQTLDQCLIREYRMSLQGLIGPMSGNF 347

Query: 321 YEGIRALTIDKDNSPKWEPPSLDKVEDGKLDLIF---QPFDKDLELQIPERE 369
            EG+RA  IDKD +PKW+PPSL+KV +  +D  F    P + DL+L +  RE
Sbjct: 348 CEGVRARLIDKDEAPKWDPPSLEKVSEDMVDDYFCALTPTEPDLDLPVKLRE 399


>AT4G31810.1 | Symbols:  | ATP-dependent caseinolytic (Clp)
           protease/crotonase family protein |
           chr4:15387365-15390290 REVERSE LENGTH=409
          Length = 409

 Score =  275 bits (704), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 151/372 (40%), Positives = 219/372 (58%), Gaps = 12/372 (3%)

Query: 4   TADTTPHEQVVLGEEIDHVRLITLNRPKQLNAISPELVSLLAAYLEKWEKDDEAYLIIIK 63
           +A     E  VL E     R   LN P  LNA+S  +V  L    E WE++     +++K
Sbjct: 33  SASDADFEDQVLVEGKAKSRAAILNNPSSLNALSAPMVGRLKRLYESWEENPAISFVLMK 92

Query: 64  GAGRAFCAGGDLRVFY---DGRKTKDSCL--EVVYRFYWLCYHIKTYKKTQVALVHGISM 118
           G+G+ FC+G D+   Y   +   T++S L  E +Y+F +L     TY K  +A++ G++M
Sbjct: 93  GSGKTFCSGADVLSLYHSINEGNTEESKLFFENLYKFVYL---QGTYLKPNIAIMDGVTM 149

Query: 119 GGGAALMAPMKFSVVTEKTVFATPEASFGFHTDCGFSYNHSRLPGHLGEYLALSGARLNG 178
           G G  +  P  F V T+KTV A PE   GFH D G SY  SRLPG+LGEYLAL+G +LNG
Sbjct: 150 GCGGGISLPGMFRVATDKTVLAHPEVQIGFHPDAGASYYLSRLPGYLGEYLALTGQKLNG 209

Query: 179 KELVAAGLATHFVSSEQIDELEKRLISLNSGDENAVRSVIEEFSLEVKIDEESILNKKSI 238
            E++A GLATH+  + ++  +E+R+  L + D   +   + ++   V  D  S+L+K  +
Sbjct: 210 VEMIACGLATHYCLNARLPLIEERIGKLLTDDPAVIEDSLAQYGDLVYPDSSSVLHKIEL 269

Query: 239 IDECFSKDSVEEIIKSLETEAQKEGNGWIGAVLKGMKRSSPTALKIALRSVREGRNQTLS 298
           ID+ F  D+VEEII+++E EA    N W    LK +K +SP +LKI L+S+REGR QTL 
Sbjct: 270 IDKYFGLDTVEEIIEAMENEAANSCNEWCKKTLKQIKEASPLSLKITLQSIREGRFQTLD 329

Query: 299 ECLKKEFGLTINILRTVISEDMYEGIRALTIDKDNSPKWEPPSLDKVEDGKLDLIFQPF- 357
           +CL  E+ ++I  +  V+S D  EGIRA  +DKD +PKW+PP L+ V    +D  F P  
Sbjct: 330 QCLTHEYRISICGVSKVVSGDFCEGIRARLVDKDFAPKWDPPRLEDVSKDMVDCYFTPAS 389

Query: 358 ---DKDLELQIP 366
              D D EL++P
Sbjct: 390 ELDDSDSELKLP 401


>AT5G65940.2 | Symbols: CHY1 | beta-hydroxyisobutyryl-CoA hydrolase
           1 | chr5:26377132-26379161 REVERSE LENGTH=328
          Length = 328

 Score =  275 bits (703), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 138/318 (43%), Positives = 203/318 (63%), Gaps = 2/318 (0%)

Query: 14  VLGEEIDHVRLITLNRPKQLNAISPELVSLLAAYLEKWEKDDEAYLIIIKGAGRAFCAGG 73
           VL EE   VR++TLNRPKQLNA+S  ++S L      +E+D    L+I+KG GRAFCAGG
Sbjct: 11  VLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGG 70

Query: 74  DLRVFYDGRKTKDSCLEVVY--RFYWLCYHIKTYKKTQVALVHGISMGGGAALMAPMKFS 131
           D+          +  L   Y    Y L Y + TY K QV++++GI MGGGA +    +F 
Sbjct: 71  DVAAVVRDINQGNWRLGANYFSSEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFR 130

Query: 132 VVTEKTVFATPEASFGFHTDCGFSYNHSRLPGHLGEYLALSGARLNGKELVAAGLATHFV 191
           + TE TVFA PE + G   D G SY  SRLPG  GEY+ L+GARL+G E++A GLATHFV
Sbjct: 131 IATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATHFV 190

Query: 192 SSEQIDELEKRLISLNSGDENAVRSVIEEFSLEVKIDEESILNKKSIIDECFSKDSVEEI 251
            S ++  LE  L  +NS D     ++++ ++   ++ ++S   +  +ID CFS+ +VEEI
Sbjct: 191 PSTRLTALEADLCRINSNDPTFASTILDAYTQHPRLKQQSAYRRLDVIDRCFSRRTVEEI 250

Query: 252 IKSLETEAQKEGNGWIGAVLKGMKRSSPTALKIALRSVREGRNQTLSECLKKEFGLTINI 311
           I +LE EA +E +GWI A ++ +K+ SP +LKI+LRS+REGR Q + +CL +E+ +  ++
Sbjct: 251 ISALEREATQEADGWISATIQALKKGSPASLKISLRSIREGRLQGVGQCLIREYRMVCHV 310

Query: 312 LRTVISEDMYEGIRALTI 329
           ++  IS+D  E ++A +I
Sbjct: 311 MKGEISKDFVEVLQAFSI 328


>AT3G60510.3 | Symbols:  | ATP-dependent caseinolytic (Clp)
           protease/crotonase family protein |
           chr3:22357141-22360003 REVERSE LENGTH=426
          Length = 426

 Score =  263 bits (673), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 148/377 (39%), Positives = 222/377 (58%), Gaps = 30/377 (7%)

Query: 23  RLITLNRPKQLNAISPELVSLLAAYLEKWEKDDEAYLIIIKGAGRAFCAGGDLRVFYD-- 80
           R   LNRP  LNA++  +   L    + WE+D     +++KG+GRAFCAGGD+   Y   
Sbjct: 48  RTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLR 107

Query: 81  GRKTKDSCLEVVYRFYWLCYHIKTYKKTQVALVHGISMGGGAALMAPMKFSVVTEKTVFA 140
            R + D+  E     Y   Y + TY K  VA+++G++MGGG  +  P  F V T++T+FA
Sbjct: 108 TRGSPDAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFA 167

Query: 141 TPEASFGFHTDCGFSYNHSRLPGHLGEYLALSGARLNGKELVAAGLATHFVSSEQIDELE 200
           TPE   GFH D G S+N S LPG LGEYL L+G +L+G E++A GLATH++ SE++  +E
Sbjct: 168 TPETIIGFHPDAGASFNLSHLPGRLGEYLGLTGLKLSGAEMLACGLATHYIRSEEVPVME 227

Query: 201 KRLISLNSGDENAVRSVIEEFSLEVKIDEESILNKKSIIDECFSKDSVEEIIKSL----- 255
           ++L  L + D + V S +E+ +     ++  ++ +  ++++CFS D+VEEII SL     
Sbjct: 228 EQLKKLLTDDPSVVESCLEKCAEVAHPEKTGVIRRIDLLEKCFSHDTVEEIIDSLVSFFT 287

Query: 256 --------------------ETEAQKEGNGWIGAVLKGMKRSSPTALKIALRSVREGRNQ 295
                               E EA +  + W    L+ +K SSP +LK+ALRS+REGR Q
Sbjct: 288 NDSASMTISVTRSNSVLGHQEIEASRRKDTWCITTLRRLKESSPLSLKVALRSIREGRLQ 347

Query: 296 TLSECLKKEFGLTINILRTVISEDMYEGIRALTIDKDNSPKWEPPSLDKVEDGKLDLIF- 354
           TL +CL +E+ +++  L   +S +  EG+RA  IDKD +PKW+PPSL+KV +  +D  F 
Sbjct: 348 TLDQCLIREYRMSLQGLIGPMSGNFCEGVRARLIDKDEAPKWDPPSLEKVSEDMVDDYFC 407

Query: 355 --QPFDKDLELQIPERE 369
              P + DL+L +  RE
Sbjct: 408 ALTPTEPDLDLPVKLRE 424


>AT3G60510.2 | Symbols:  | ATP-dependent caseinolytic (Clp)
           protease/crotonase family protein |
           chr3:22357584-22360003 REVERSE LENGTH=317
          Length = 317

 Score =  207 bits (527), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 111/269 (41%), Positives = 168/269 (62%), Gaps = 2/269 (0%)

Query: 23  RLITLNRPKQLNAISPELVSLLAAYLEKWEKDDEAYLIIIKGAGRAFCAGGDLRVFYD-- 80
           R   LNRP  LNA++  +   L    + WE+D     +++KG+GRAFCAGGD+   Y   
Sbjct: 48  RTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLR 107

Query: 81  GRKTKDSCLEVVYRFYWLCYHIKTYKKTQVALVHGISMGGGAALMAPMKFSVVTEKTVFA 140
            R + D+  E     Y   Y + TY K  VA+++G++MGGG  +  P  F V T++T+FA
Sbjct: 108 TRGSPDAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFA 167

Query: 141 TPEASFGFHTDCGFSYNHSRLPGHLGEYLALSGARLNGKELVAAGLATHFVSSEQIDELE 200
           TPE   GFH D G S+N S LPG LGEYL L+G +L+G E++A GLATH++ SE++  +E
Sbjct: 168 TPETIIGFHPDAGASFNLSHLPGRLGEYLGLTGLKLSGAEMLACGLATHYIRSEEVPVME 227

Query: 201 KRLISLNSGDENAVRSVIEEFSLEVKIDEESILNKKSIIDECFSKDSVEEIIKSLETEAQ 260
           ++L  L + D + V S +E+ +     ++  ++ +  ++++CFS D+VEEII SLE EA 
Sbjct: 228 EQLKKLLTDDPSVVESCLEKCAEVAHPEKTGVIRRIDLLEKCFSHDTVEEIIDSLEIEAS 287

Query: 261 KEGNGWIGAVLKGMKRSSPTALKIALRSV 289
           +  + W    L+ +K SSP +LK+ALRS+
Sbjct: 288 RRKDTWCITTLRRLKESSPLSLKVALRSL 316


>AT4G13360.1 | Symbols:  | ATP-dependent caseinolytic (Clp)
           protease/crotonase family protein | chr4:7775133-7777701
           FORWARD LENGTH=421
          Length = 421

 Score =  178 bits (452), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 122/366 (33%), Positives = 207/366 (56%), Gaps = 32/366 (8%)

Query: 22  VRLITLNRPKQLNAISPELVSLLAAYLEKWEKDDEAYLIIIKGA-GRAFCAGGDLR-VFY 79
           V LITL+R K LNA++ ++     ++L++WE D     +I++G+  RAFCAG D++ V  
Sbjct: 59  VALITLDRTKALNAMNLDMDIKYKSFLDEWESDPRVKCVIVEGSTSRAFCAGMDIKGVAA 118

Query: 80  DGRKTKDSCL--EVVYRFYWLCYHIKTYKKTQVALVHGISMGGGAALMAPMKFSVVTEKT 137
           + +K K++ L  +V    Y L   I  YKK  ++L+ GI+MG G  L    ++ V+TE+T
Sbjct: 119 EIQKDKNTPLVQKVFTAEYTLICAIAAYKKPYISLMDGITMGFGLGLSGHGRYRVITERT 178

Query: 138 VFATPEASFGFHTDCGFSY--NHSRLPGHLGEYLALSGARLNG-KELVAAGLATHFVSSE 194
           V A PE   G   D GFSY   HS   G +G YL L+G R++   + +  GL TH+V SE
Sbjct: 179 VLAMPENGIGLFPDVGFSYIAAHSPGGGSVGAYLGLTGKRISAPSDALFVGLGTHYVPSE 238

Query: 195 QIDELEKRLISLN-SGDENA-VRSVIEEFSLEVKIDEESILNKKSI---IDECFSKD-SV 248
           ++  L++ ++S N S D N  +++ + ++S     + ES  + KS+   I+  FS + S+
Sbjct: 239 KLASLKEAILSANLSEDPNQDIQATLSKYS----SNPESEAHLKSLLPHIESAFSSNKSI 294

Query: 249 EEIIKSLETEAQKEGNG---WIGAVLKGMKRSSPTALKIA---------LRSVREGRNQT 296
           +E I+ L+   Q   +    W    LKG+++ +P +L +           +S  E    T
Sbjct: 295 KETIEELKKYQQSTESSVVEWANEALKGLEKGAPFSLYLTQKYFSNVACAKSKPENELAT 354

Query: 297 LSECLKKEFGLTINILRTVISEDMYEGIRALTIDKDNSPKWEPPSLDKVEDGKLDLIFQP 356
           L+  +K E+ +    LR+ +  D  EG+RA+ IDKD +PKW P S+++V++ +++ +F+P
Sbjct: 355 LNGVMKTEYRIA---LRSALRGDFAEGVRAVLIDKDQNPKWNPTSIEEVDENEVEALFKP 411

Query: 357 FDKDLE 362
              ++E
Sbjct: 412 LSPEVE 417


>AT3G24360.2 | Symbols:  | ATP-dependent caseinolytic (Clp)
           protease/crotonase family protein | chr3:8839832-8842799
           REVERSE LENGTH=414
          Length = 414

 Score =  172 bits (435), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 110/363 (30%), Positives = 198/363 (54%), Gaps = 30/363 (8%)

Query: 22  VRLITLNRPKQLNAISPELVSLLAAYLEKWEKDDEAYLIIIKGA-GRAFCAGGDLRVFYD 80
           V LITL+RPK LNA++ E+     + L++WE D     ++++G+  RAFCAGGD++    
Sbjct: 56  VALITLDRPKALNAMNLEMDLKYKSLLDEWEYDPGVKCVVVEGSTSRAFCAGGDVKQITS 115

Query: 81  GRKTKDSCLEVVYRFYWLCYHIKTYKKTQVALVHGISMGGGAALMAPMKFSVVTEKTVFA 140
             +  D  +EV    Y L   I  Y+K  ++L+ GI+MG G  L    ++ V+TE+TV A
Sbjct: 116 KNQLSD-MIEVFTAEYSLICKIAGYRKPYISLMDGITMGFGLGLSGHGRYRVITERTVLA 174

Query: 141 TPEASFGFHTDCGFSY--NHSRLPGHLGEYLALSGARLNG-KELVAAGLATHFVSSEQID 197
            PE   G   D GFSY   HS   G +G YL ++G R++   + +  GL TH+V S ++ 
Sbjct: 175 MPENGIGLFPDVGFSYIAAHSPGEGSVGAYLGMTGRRISTPSDALFVGLGTHYVPSGKLG 234

Query: 198 ELEKRLIS--LNSGDENAVRSVIEEFSLEVKIDE--ESILNKKSIIDECFS-----KDSV 248
            L + ++S  L+   +  +++ +  +S + + +   + +L +   I+  FS     K+++
Sbjct: 235 SLREAILSADLSKDPQQHIQATLSNYSSDPETESHLQMLLPQ---IESAFSVSKSVKETI 291

Query: 249 EEIIKSLETEAQKEGNGWIGAVLKGMKRSSPTALKIALR-----SVREGRNQ----TLSE 299
           EE +K  +  ++     W    ++G+++ +P +L +  +     +  +G+      TL+ 
Sbjct: 292 EE-LKKFQQSSEASVAEWANEAVQGIEKGAPFSLYLTHKYFSKVACAKGKTNNAMATLNG 350

Query: 300 CLKKEFGLTINILRTVISEDMYEGIRALTIDKDNSPKWEPPSLDKVEDGKLDLIFQPFDK 359
            +  E+ +    LR+ +  D  EG+RA+  DKD +PKW+P SLD+V++ ++D +F P   
Sbjct: 351 VMITEYRIA---LRSALRSDFTEGVRAVLTDKDQNPKWKPASLDEVDETEVDALFMPLSP 407

Query: 360 DLE 362
           + E
Sbjct: 408 EFE 410


>AT3G24360.1 | Symbols:  | ATP-dependent caseinolytic (Clp)
           protease/crotonase family protein | chr3:8839832-8842799
           REVERSE LENGTH=418
          Length = 418

 Score =  164 bits (414), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 201/368 (54%), Gaps = 32/368 (8%)

Query: 20  DHVRLITLNRPKQLNAISPELVSLLAAYLEKWEKDDEAYLIIIKGA-GRAFCAGGDLR-V 77
           + V LITL+RPK LNA++ E+     + L++WE D     ++++G+  RAFCAG D++ V
Sbjct: 54  NGVALITLDRPKALNAMNLEMDLKYKSLLDEWEYDPGVKCVVVEGSTSRAFCAGMDIKGV 113

Query: 78  FYDGRKTKDSCL--EVVYRFYWLCYHIKTYKKTQVALVHGISMGGGAALMAPMKFSVVTE 135
             +    K++ L  +V    Y L   I  Y+K  ++L+ GI+MG G  L    ++ V+TE
Sbjct: 114 VAEILMDKNTSLVQKVFTAEYSLICKIAGYRKPYISLMDGITMGFGLGLSGHGRYRVITE 173

Query: 136 KTVFATPEASFGFHTDCGFSY--NHSRLPGHLGEYLALSGARLNG-KELVAAGLATHFVS 192
           +TV A PE   G   D GFSY   HS   G +G YL ++G R++   + +  GL TH+V 
Sbjct: 174 RTVLAMPENGIGLFPDVGFSYIAAHSPGEGSVGAYLGMTGRRISTPSDALFVGLGTHYVP 233

Query: 193 SEQIDELEKRLIS--LNSGDENAVRSVIEEFSLEVKIDE--ESILNKKSIIDECFS---- 244
           S ++  L + ++S  L+   +  +++ +  +S + + +   + +L +   I+  FS    
Sbjct: 234 SGKLGSLREAILSADLSKDPQQHIQATLSNYSSDPETESHLQMLLPQ---IESAFSVSKS 290

Query: 245 -KDSVEEIIKSLETEAQKEGNGWIGAVLKGMKRSSPTALKIALR-----SVREGRNQ--- 295
            K+++EE+ K  +  ++     W    ++G+++ +P +L +  +     +  +G+     
Sbjct: 291 VKETIEEL-KKFQQSSEASVAEWANEAVQGIEKGAPFSLYLTHKYFSKVACAKGKTNNAM 349

Query: 296 -TLSECLKKEFGLTINILRTVISEDMYEGIRALTIDKDNSPKWEPPSLDKVEDGKLDLIF 354
            TL+  +  E+ +    LR+ +  D  EG+RA+  DKD +PKW+P SLD+V++ ++D +F
Sbjct: 350 ATLNGVMITEYRIA---LRSALRSDFTEGVRAVLTDKDQNPKWKPASLDEVDETEVDALF 406

Query: 355 QPFDKDLE 362
            P   + E
Sbjct: 407 MPLSPEFE 414


>AT5G43280.1 | Symbols: ATDCI1, DCI1 |
           delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 |
           chr5:17367947-17369113 FORWARD LENGTH=278
          Length = 278

 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 82/199 (41%), Gaps = 19/199 (9%)

Query: 25  ITLNRPKQLNAISPELVSLLAAYLEKWEKDDEAYLIIIKGAGRAFCAGGDLRVFY----- 79
           + +NRP  LNA+S +        L   +++ +  +II+ GAG+ FC+G DL         
Sbjct: 23  LIINRPSHLNALSLDFFIEFPKALSSLDQNPDVSVIILSGAGKHFCSGIDLNSLSSISTQ 82

Query: 80  -----DGRKTKDSCLEVVYRFYWLCYHIKTYKKTQVALVHGISMGGGAALMAPMKFSVVT 134
                D  ++ +     +         I+  +K  +A +HG  +GGG  L+        +
Sbjct: 83  SSSGNDRGRSSEQLRRKIKSMQAAITAIEQCRKPVIAAIHGACIGGGVDLITACDIRYCS 142

Query: 135 EKTVFATPEASFGFHTDCGFSYNHSRLPGHLGEY----LALSGARLNGKELVAAGLATHF 190
           E   F+  E       D G      RLP  +G      LAL+  R +G E    GL +  
Sbjct: 143 EDAFFSIKEVDLAIVADLG---TLQRLPSIVGYANAMELALTARRFSGSEAKDLGLVSKV 199

Query: 191 VSSEQIDELEKRLISLNSG 209
             S+   EL+  + ++  G
Sbjct: 200 FGSKS--ELDNGVTTIAEG 216


>AT5G43280.2 | Symbols: ATDCI1, DCI1 |
           delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 |
           chr5:17367947-17368750 FORWARD LENGTH=220
          Length = 220

 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 18/189 (9%)

Query: 25  ITLNRPKQLNAISPELVSLLAAYLEKWEKDDEAYLIIIKGAGRAFCAGGDLRVFY----- 79
           + +NRP  LNA+S +        L   +++ +  +II+ GAG+ FC+G DL         
Sbjct: 23  LIINRPSHLNALSLDFFIEFPKALSSLDQNPDVSVIILSGAGKHFCSGIDLNSLSSISTQ 82

Query: 80  -----DGRKTKDSCLEVVYRFYWLCYHIKTYKKTQVALVHGISMGGGAALMAPMKFSVVT 134
                D  ++ +     +         I+  +K  +A +HG  +GGG  L+        +
Sbjct: 83  SSSGNDRGRSSEQLRRKIKSMQAAITAIEQCRKPVIAAIHGACIGGGVDLITACDIRYCS 142

Query: 135 EKTVFATPEASFGFHTDCGFSYNHSRLPGHLGEY----LALSGARLNGKELVAAGLATH- 189
           E   F+  E       D G      RLP  +G      LAL+  R +G E    GL +  
Sbjct: 143 EDAFFSIKEVDLAIVADLG---TLQRLPSIVGYANAMELALTARRFSGSEAKDLGLVSKV 199

Query: 190 FVSSEQIDE 198
           F S  ++D 
Sbjct: 200 FGSKSELDN 208


>AT4G16210.1 | Symbols: ECHIA, E-COAH-2 | enoyl-CoA
           hydratase/isomerase A | chr4:9176864-9177978 REVERSE
           LENGTH=265
          Length = 265

 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 12/162 (7%)

Query: 6   DTTPHEQVV-LGEEIDHVRLITLNRPKQLNAISPELVSLLAAYLEKWEKDDEAYLIIIKG 64
           D T  E ++ + +E   + +IT+NRPK LN+++  ++  LA   +  + D+   ++I  G
Sbjct: 2   DQTVSENLIQVKKESGGIAVITINRPKSLNSLTRAMMVDLAKAFKDMDSDESVQVVIFTG 61

Query: 65  AGRAFCAGGDLRV---FYDGRKTKDSCLEVVYRFYWLCYHIKTYKKTQVALVHGISMGGG 121
           +GR+FC+G DL      + G   KD   + V +   L       +K  +  ++G ++  G
Sbjct: 62  SGRSFCSGVDLTAAESVFKG-DVKDPETDPVVQMERL-------RKPIIGAINGFAITAG 113

Query: 122 AALMAPMKFSVVTEKTVFATPEASFGFHTDCGFSYNHSRLPG 163
             L       V +    F    A FG     G S   SR+ G
Sbjct: 114 FELALACDILVASRGAKFMDTHARFGIFPSWGLSQKLSRIIG 155


>AT4G16800.1 | Symbols:  | ATP-dependent caseinolytic (Clp)
           protease/crotonase family protein | chr4:9454931-9457000
           REVERSE LENGTH=301
          Length = 301

 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 6/177 (3%)

Query: 25  ITLNRPKQLNAISPELVSLLAAYLEKWEKDDEAYLIIIKG-AGRAFCAGGDLRVFYDGRK 83
           + L+RP   NAI+ E++  L    E   +D+ A +++I+      FCAG DL+   + R 
Sbjct: 58  VNLDRPVTKNAINKEMLKSLQNAFESIHQDNSARVVMIRSLVPGVFCAGADLK---ERRT 114

Query: 84  TKDSCLEV-VYRFYWLCYHIKTYKKTQVALVHGISMGGGAALMAPMKFSVVTEKTVFATP 142
              S +   V    ++   I+      +A + G ++GGG  +       +  E  VF  P
Sbjct: 115 MSPSEVHTYVNSLRYMFSFIEALSIPTIAAIEGAALGGGLEMALACDLRICGENAVFGLP 174

Query: 143 EASFGFHTDCGFSYNHSRLPGH-LGEYLALSGARLNGKELVAAGLATHFVSSEQIDE 198
           E         G +   SRL G  + + L  +G +++  E    GL    V++ +  E
Sbjct: 175 ETGLAIIPGAGGTQRLSRLVGRSVSKELIFTGRKIDAIEAANKGLVNICVTAGEAHE 231


>AT1G60550.1 | Symbols: ECHID, DHNS | enoyl-CoA hydratase/isomerase
           D | chr1:22305988-22308092 REVERSE LENGTH=337
          Length = 337

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 25  ITLNRPKQLNAISPELVSLLAAYLEKWEKDDEAYLIIIKGAG-RAFCAGGD--LRVFYDG 81
           IT+NRP++ NA  P+ V  L         D    +II+ G G +AFC+GGD  LR   DG
Sbjct: 90  ITINRPERRNAFRPQTVKELMRAFNDARDDSSVGVIILTGKGTKAFCSGGDQALRT-QDG 148

Query: 82  RKTKDSCLEVVYRFYWLCYHIKTYKKTQVALVHGISMGGGAALMAPMKFSVVTEKTVFAT 141
               +    +      L   I+   K  +A+V G ++GGG  L      ++  +  +F  
Sbjct: 149 YADPNDVGRL--NVLDLQVQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAIFGQ 206

Query: 142 PEASFGFHTDCGF-SYNHSRLPG 163
                G   D G+ S   SRL G
Sbjct: 207 TGPKVG-SFDAGYGSSIMSRLVG 228