Miyakogusa Predicted Gene

Lj0g3v0350949.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0350949.1 tr|A9TVB0|A9TVB0_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,38.59,1e-18,URIDINKINASE,Uridine kinase; no
description,NULL; seg,NULL; P-loop containing nucleoside
triphosphat,CUFF.24116.1
         (211 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G26190.1 | Symbols:  | Phosphoribulokinase / Uridine kinase f...   327   4e-90
AT1G73980.1 | Symbols:  | Phosphoribulokinase / Uridine kinase f...   319   7e-88
AT2G01460.1 | Symbols:  | P-loop containing nucleoside triphosph...   114   4e-26
AT2G01460.2 | Symbols:  | P-loop containing nucleoside triphosph...   103   9e-23
AT5G40870.1 | Symbols: ATUK/UPRT1, UKL1, UK/UPRT1 | uridine kina...    68   6e-12
AT3G27190.1 | Symbols: UKL2 | uridine kinase-like 2 | chr3:10039...    64   5e-11
AT1G55810.2 | Symbols: UKL3 | uridine kinase-like 3 | chr1:20861...    62   4e-10
AT1G55810.3 | Symbols: UKL3 | uridine kinase-like 3 | chr1:20861...    62   4e-10
AT1G55810.1 | Symbols: UKL3 | uridine kinase-like 3 | chr1:20861...    62   4e-10
AT4G26510.2 | Symbols: UKL4 | uridine kinase-like 4 | chr4:13384...    61   5e-10
AT4G26510.1 | Symbols: UKL4 | uridine kinase-like 4 | chr4:13384...    61   5e-10
AT3G27440.1 | Symbols: UKL5 | uridine kinase-like 5 | chr3:10155...    56   1e-08

>AT1G26190.1 | Symbols:  | Phosphoribulokinase / Uridine kinase
           family | chr1:9057285-9060433 REVERSE LENGTH=674
          Length = 674

 Score =  327 bits (838), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 161/214 (75%), Positives = 181/214 (84%), Gaps = 3/214 (1%)

Query: 1   MAQDNSGADCCL---GLIRDQVRLVKRKHSDRYEVAPIHDQLSFEKGYFVVFHACQLLVQ 57
           M QD++G +      GL++DQV+LVKR+ S RYE+  I D+LSFEKG+F V  ACQLL Q
Sbjct: 1   MGQDSNGIEFHQKRHGLLKDQVQLVKRRDSIRYEIVSIQDRLSFEKGFFAVIRACQLLSQ 60

Query: 58  KNDGIILVGVAGPSGAGKTAFTEKILNILPGIAVISMDNYNDSSQIVDGNFDDPRVTDYE 117
           KNDGIILVGVAGPSGAGKT FTEKILN LP +AVISMDNYNDSS+IVDGNFDDPR+TDY+
Sbjct: 61  KNDGIILVGVAGPSGAGKTVFTEKILNFLPSVAVISMDNYNDSSRIVDGNFDDPRLTDYD 120

Query: 118 TLLRNIRDLKEGKPVQVPIYDFKSSSRTGYRTVDVPSSRIVIIEGIYALSEKXXXXXXXX 177
           TLL+N+ DLKEGK V+VPIYDFKSSSR GYRT+DVP SRIVIIEGIYALSEK        
Sbjct: 121 TLLKNLEDLKEGKQVEVPIYDFKSSSRVGYRTLDVPPSRIVIIEGIYALSEKLRPLLDLR 180

Query: 178 VSVTGGVHLDLVKRVIRDIQRAGQEPEEIIHQIS 211
           VSVTGGVH DLVKRV+RDIQRAGQ+PEEIIHQIS
Sbjct: 181 VSVTGGVHFDLVKRVLRDIQRAGQQPEEIIHQIS 214


>AT1G73980.1 | Symbols:  | Phosphoribulokinase / Uridine kinase
           family | chr1:27820292-27823527 REVERSE LENGTH=643
          Length = 643

 Score =  319 bits (818), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 150/199 (75%), Positives = 173/199 (86%)

Query: 13  GLIRDQVRLVKRKHSDRYEVAPIHDQLSFEKGYFVVFHACQLLVQKNDGIILVGVAGPSG 72
           GL+RDQV+L+KRK S RYE+ PI D LSFEKG++ V  ACQLL QKNDG+ILVG+AGPSG
Sbjct: 16  GLLRDQVQLIKRKDSGRYEIVPIEDPLSFEKGFYAVIRACQLLAQKNDGLILVGLAGPSG 75

Query: 73  AGKTAFTEKILNILPGIAVISMDNYNDSSQIVDGNFDDPRVTDYETLLRNIRDLKEGKPV 132
           AGKT FTEKILN +P IA+I+MDNYND ++++DGNFDDPR+TDY+TLL NI  L++GKPV
Sbjct: 76  AGKTIFTEKILNFMPSIAIINMDNYNDGTRVIDGNFDDPRLTDYDTLLDNIHGLRDGKPV 135

Query: 133 QVPIYDFKSSSRTGYRTVDVPSSRIVIIEGIYALSEKXXXXXXXXVSVTGGVHLDLVKRV 192
           QVPIYDFKSSSR GYRT++VPSSRIVI+EGIYALSEK        VSVTGGVH DLVKRV
Sbjct: 136 QVPIYDFKSSSRIGYRTLEVPSSRIVILEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRV 195

Query: 193 IRDIQRAGQEPEEIIHQIS 211
           +RDIQRAGQEPEEIIHQIS
Sbjct: 196 LRDIQRAGQEPEEIIHQIS 214


>AT2G01460.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr2:206136-211765
           FORWARD LENGTH=955
          Length = 955

 Score =  114 bits (285), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 97/174 (55%), Gaps = 2/174 (1%)

Query: 28  DRYEVAPIHDQLSFEKGYFVVFHACQLLVQKNDGIILVGVAGPSGAGKTAFTEKILNILP 87
           D   + P+ D    ++G  +   A Q L++     ++VG+ GPSG+GKT+   K+ NI+ 
Sbjct: 491 DNMRLVPMPDSYDLDRGLLLSVQAIQALLENKGPPVIVGIGGPSGSGKTSLAHKMANIV- 549

Query: 88  GIAVISMDNYNDSSQIVDGNFDDPRVTDYETLLRNIRDLKEGKPVQVPIYDFKSSSRTGY 147
           G  V+S+++Y  S Q+ D   DD    D   L +NI D+   +  ++PI+D ++ +R G+
Sbjct: 550 GCEVVSLESYFKSEQVKDFKHDDFSSLDLPLLSKNISDITNSRRTKLPIFDLETGTRCGF 609

Query: 148 RTVDVPSS-RIVIIEGIYALSEKXXXXXXXXVSVTGGVHLDLVKRVIRDIQRAG 200
           + ++VP    ++I EG+YAL  +        V+V GGVH  L+ RV RD  R G
Sbjct: 610 KELEVPEECGVIIFEGVYALHPEIRQSLDLWVAVVGGVHSHLISRVQRDKSRIG 663



 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 16/164 (9%)

Query: 38  QLSFEKGYFVVFHACQLLVQKNDGIILVGVAGPSGAGKTAFTEKILNILPGIAVISMDNY 97
            ++F+ GY+++  + Q L +K DGI+ VG+ GPSG+GK++  EK+ +++ G  VI+M++Y
Sbjct: 38  HVAFDHGYYLLVKSIQELREKKDGIVTVGIGGPSGSGKSSLAEKVASVI-GCTVIAMEDY 96

Query: 98  NDSSQIVDGN----FD-DPRVTDYETLLRNIRDLKEGKPVQVPIYDFKSSSRTGYRTVDV 152
            DS  + DGN     D D  V + E L+        GK    P++DF+   R   + V  
Sbjct: 97  RDS--LDDGNELETLDFDALVQNLEDLI-------NGKDTLAPVFDFQQKKRVDSKMVKT 147

Query: 153 PSSRIVIIEGIYALSEKXXXXXXXXVSVTGGVHLDLVKRVIRDI 196
            SS +VI++G YAL  +        V+V GGVH  L+ +V  DI
Sbjct: 148 -SSGVVIVDGTYALHARLRSLLDIRVAVVGGVHFSLLSKVRYDI 190


>AT2G01460.2 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr2:206136-211765
           FORWARD LENGTH=954
          Length = 954

 Score =  103 bits (257), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 93/173 (53%), Gaps = 1/173 (0%)

Query: 28  DRYEVAPIHDQLSFEKGYFVVFHACQLLVQKNDGIILVGVAGPSGAGKTAFTEKILNILP 87
           D   + P+ D    ++G  +   A Q L++     ++VG+ GPSG+GKT+   K+ NI+ 
Sbjct: 491 DNMRLVPMPDSYDLDRGLLLSVQAIQALLENKGPPVIVGIGGPSGSGKTSLAHKMANIV- 549

Query: 88  GIAVISMDNYNDSSQIVDGNFDDPRVTDYETLLRNIRDLKEGKPVQVPIYDFKSSSRTGY 147
           G  V+S+++Y  S Q+ D   DD    D   L +NI D+   +  ++PI+D ++ +R G+
Sbjct: 550 GCEVVSLESYFKSEQVKDFKHDDFSSLDLPLLSKNISDITNSRRTKLPIFDLETGTRCGF 609

Query: 148 RTVDVPSSRIVIIEGIYALSEKXXXXXXXXVSVTGGVHLDLVKRVIRDIQRAG 200
           + ++VP    V+ +    +S +        V+V GGVH  L+ RV RD  R G
Sbjct: 610 KELEVPEECGVVSDHSLHISYEIRQSLDLWVAVVGGVHSHLISRVQRDKSRIG 662



 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 16/164 (9%)

Query: 38  QLSFEKGYFVVFHACQLLVQKNDGIILVGVAGPSGAGKTAFTEKILNILPGIAVISMDNY 97
            ++F+ GY+++  + Q L +K DGI+ VG+ GPSG+GK++  EK+ +++ G  VI+M++Y
Sbjct: 38  HVAFDHGYYLLVKSIQELREKKDGIVTVGIGGPSGSGKSSLAEKVASVI-GCTVIAMEDY 96

Query: 98  NDSSQIVDGN----FD-DPRVTDYETLLRNIRDLKEGKPVQVPIYDFKSSSRTGYRTVDV 152
            DS  + DGN     D D  V + E L+        GK    P++DF+   R   + V  
Sbjct: 97  RDS--LDDGNELETLDFDALVQNLEDLI-------NGKDTLAPVFDFQQKKRVDSKMVKT 147

Query: 153 PSSRIVIIEGIYALSEKXXXXXXXXVSVTGGVHLDLVKRVIRDI 196
            SS +VI++G YAL  +        V+V GGVH  L+ +V  DI
Sbjct: 148 -SSGVVIVDGTYALHARLRSLLDIRVAVVGGVHFSLLSKVRYDI 190


>AT5G40870.1 | Symbols: ATUK/UPRT1, UKL1, UK/UPRT1 | uridine
           kinase/uracil phosphoribosyltransferase 1 |
           chr5:16375021-16378384 FORWARD LENGTH=486
          Length = 486

 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 77/158 (48%), Gaps = 9/158 (5%)

Query: 63  ILVGVAGPSGAGKTAFTEKILNILPG--IAVISMDNY------NDSSQIVDGNFDDPRVT 114
            ++GV+G + +GKT   + I+  L    + +++ D++       +  ++ + NFD P   
Sbjct: 63  FIIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLTSEELQRVQEYNFDHPDAF 122

Query: 115 DYETLLRNIRDLKEGKPVQVPIYDFKSSSRTGYRTVDVPSSRIVIIEGIYALSE-KXXXX 173
           D E LL     LK G+P QVPIYDFK+  R       V +S ++I+EGI    + +    
Sbjct: 123 DTEQLLHCAETLKSGQPYQVPIYDFKTHQRRSDTFRQVNASDVIILEGILVFHDSRVRNL 182

Query: 174 XXXXVSVTGGVHLDLVKRVIRDIQRAGQEPEEIIHQIS 211
               + V     + L +R+ RD    G++   ++ Q +
Sbjct: 183 MNMKIFVDTDADVRLARRIRRDTVERGRDVNSVLEQYA 220


>AT3G27190.1 | Symbols: UKL2 | uridine kinase-like 2 |
           chr3:10039504-10042917 REVERSE LENGTH=483
          Length = 483

 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 9/158 (5%)

Query: 63  ILVGVAGPSGAGKTAFTEKILNILPG--IAVISMDNY------NDSSQIVDGNFDDPRVT 114
            ++GV G + +GKT   + I+  L    I +++ D++       +   + + NFD P   
Sbjct: 63  FVIGVTGGTASGKTTVCDMIIQQLHDHRIVLVNQDSFYRGLTSEELEHVQEYNFDHPDAF 122

Query: 115 DYETLLRNIRDLKEGKPVQVPIYDFKSSSRTGYRTVDVPSSRIVIIEGIYALSE-KXXXX 173
           D E LL  +  LK G+P Q+PIYDFK+  R       V +  ++I+EGI    + +    
Sbjct: 123 DTEQLLHCVDILKSGQPYQIPIYDFKTHQRKVDAFRQVNACDVIILEGILVFHDSRVRDL 182

Query: 174 XXXXVSVTGGVHLDLVKRVIRDIQRAGQEPEEIIHQIS 211
               + V     + L +R+ RD    G++ + ++ Q +
Sbjct: 183 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYA 220


>AT1G55810.2 | Symbols: UKL3 | uridine kinase-like 3 |
           chr1:20861273-20864003 FORWARD LENGTH=461
          Length = 461

 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 9/158 (5%)

Query: 63  ILVGVAGPSGAGKTAFTEKILNILPG--IAVISMDNYNDSSQIV------DGNFDDPRVT 114
            ++GVAG + +GKT   + I+  L      V++ D++  +   V      D NFD P   
Sbjct: 45  FVIGVAGGAASGKTTVCDMIMQQLHDQRAVVVNQDSFYHNVNEVELVRVHDYNFDHPDAF 104

Query: 115 DYETLLRNIRDLKEGKPVQVPIYDFKSSSRTGYRTVDVPSSRIVIIEGIYALSE-KXXXX 173
           D E LL ++  L++G+ V +P YDFKS     +    V  S ++I+EGI    + +    
Sbjct: 105 DTEQLLSSMEKLRKGQAVDIPNYDFKSYKNNVFPPRRVNPSDVIILEGILIFHDPRVRDL 164

Query: 174 XXXXVSVTGGVHLDLVKRVIRDIQRAGQEPEEIIHQIS 211
               + V     + L +R+ RD    G++   ++ Q S
Sbjct: 165 MNMKIFVDADADVRLARRIKRDTVEKGRDIATVLDQYS 202


>AT1G55810.3 | Symbols: UKL3 | uridine kinase-like 3 |
           chr1:20861273-20864003 FORWARD LENGTH=466
          Length = 466

 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 9/158 (5%)

Query: 63  ILVGVAGPSGAGKTAFTEKILNILPG--IAVISMDNYNDSSQIV------DGNFDDPRVT 114
            ++GVAG + +GKT   + I+  L      V++ D++  +   V      D NFD P   
Sbjct: 45  FVIGVAGGAASGKTTVCDMIMQQLHDQRAVVVNQDSFYHNVNEVELVRVHDYNFDHPDAF 104

Query: 115 DYETLLRNIRDLKEGKPVQVPIYDFKSSSRTGYRTVDVPSSRIVIIEGIYALSE-KXXXX 173
           D E LL ++  L++G+ V +P YDFKS     +    V  S ++I+EGI    + +    
Sbjct: 105 DTEQLLSSMEKLRKGQAVDIPNYDFKSYKNNVFPPRRVNPSDVIILEGILIFHDPRVRDL 164

Query: 174 XXXXVSVTGGVHLDLVKRVIRDIQRAGQEPEEIIHQIS 211
               + V     + L +R+ RD    G++   ++ Q S
Sbjct: 165 MNMKIFVDADADVRLARRIKRDTVEKGRDIATVLDQYS 202


>AT1G55810.1 | Symbols: UKL3 | uridine kinase-like 3 |
           chr1:20861273-20864003 FORWARD LENGTH=466
          Length = 466

 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 9/158 (5%)

Query: 63  ILVGVAGPSGAGKTAFTEKILNILPG--IAVISMDNYNDSSQIV------DGNFDDPRVT 114
            ++GVAG + +GKT   + I+  L      V++ D++  +   V      D NFD P   
Sbjct: 45  FVIGVAGGAASGKTTVCDMIMQQLHDQRAVVVNQDSFYHNVNEVELVRVHDYNFDHPDAF 104

Query: 115 DYETLLRNIRDLKEGKPVQVPIYDFKSSSRTGYRTVDVPSSRIVIIEGIYALSE-KXXXX 173
           D E LL ++  L++G+ V +P YDFKS     +    V  S ++I+EGI    + +    
Sbjct: 105 DTEQLLSSMEKLRKGQAVDIPNYDFKSYKNNVFPPRRVNPSDVIILEGILIFHDPRVRDL 164

Query: 174 XXXXVSVTGGVHLDLVKRVIRDIQRAGQEPEEIIHQIS 211
               + V     + L +R+ RD    G++   ++ Q S
Sbjct: 165 MNMKIFVDADADVRLARRIKRDTVEKGRDIATVLDQYS 202


>AT4G26510.2 | Symbols: UKL4 | uridine kinase-like 4 |
           chr4:13384503-13387920 FORWARD LENGTH=469
          Length = 469

 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 81/158 (51%), Gaps = 11/158 (6%)

Query: 63  ILVGVAGPSGAGKTAFTEKILNILPG--IAVISMDNY------NDSSQIVDGNFDDPRVT 114
            ++GVAG + +GKT   + I+  L    + +I++D++       + +++ + NFD P   
Sbjct: 50  FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLINLDSFYHNLTEEELARVHEYNFDHPDAF 109

Query: 115 DYETLLRNIRDLKEGKPVQVPIYDFKSSSRTGYRTVDVPSSRIVIIEGIYALSE-KXXXX 173
           D E LL  +  L++G+ V +P YDFK+   + +R V+   + ++I+EGI    + +    
Sbjct: 110 DTEHLLSCMEKLRQGQAVDIPKYDFKTYRSSVFRRVN--PTDVIILEGILLFHDPRVRKL 167

Query: 174 XXXXVSVTGGVHLDLVKRVIRDIQRAGQEPEEIIHQIS 211
               + V     + L +R+ RD    G++   ++ Q S
Sbjct: 168 MNMKIFVCTDADVRLARRIKRDTVENGRDIGTVLDQYS 205


>AT4G26510.1 | Symbols: UKL4 | uridine kinase-like 4 |
           chr4:13384503-13387920 FORWARD LENGTH=469
          Length = 469

 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 81/158 (51%), Gaps = 11/158 (6%)

Query: 63  ILVGVAGPSGAGKTAFTEKILNILPG--IAVISMDNY------NDSSQIVDGNFDDPRVT 114
            ++GVAG + +GKT   + I+  L    + +I++D++       + +++ + NFD P   
Sbjct: 50  FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLINLDSFYHNLTEEELARVHEYNFDHPDAF 109

Query: 115 DYETLLRNIRDLKEGKPVQVPIYDFKSSSRTGYRTVDVPSSRIVIIEGIYALSE-KXXXX 173
           D E LL  +  L++G+ V +P YDFK+   + +R V+   + ++I+EGI    + +    
Sbjct: 110 DTEHLLSCMEKLRQGQAVDIPKYDFKTYRSSVFRRVN--PTDVIILEGILLFHDPRVRKL 167

Query: 174 XXXXVSVTGGVHLDLVKRVIRDIQRAGQEPEEIIHQIS 211
               + V     + L +R+ RD    G++   ++ Q S
Sbjct: 168 MNMKIFVCTDADVRLARRIKRDTVENGRDIGTVLDQYS 205


>AT3G27440.1 | Symbols: UKL5 | uridine kinase-like 5 |
           chr3:10155555-10157931 FORWARD LENGTH=465
          Length = 465

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 76/156 (48%), Gaps = 10/156 (6%)

Query: 63  ILVGVAGPSGAGKTAFTEKILNILPG--IAVISMDNYNDS------SQIVDGNFDDPRVT 114
            ++GVAG + +GKT     I++ L    + +++ D++  S      +++ + NFD P   
Sbjct: 30  FVIGVAGGTASGKTTVCNMIMSQLHDQRVVLVNQDSFYHSLTKEKLNKVHEYNFDHPDAF 89

Query: 115 DYETLLRNIRDLKEGKPVQVPIYDFKSSSRTGYRTVDVPSSRIVIIEGIYALSE-KXXXX 173
           + E LL  +  L+ G+PV +P YDFK        +   P   ++I+EGI  L++ +    
Sbjct: 90  NTEVLLSCMEKLRSGQPVNIPSYDFKIHQSIESSSPVNPGD-VIILEGILVLNDPRVRDL 148

Query: 174 XXXXVSVTGGVHLDLVKRVIRDIQRAGQEPEEIIHQ 209
               + V     + L +R+ RD    G+  + ++ Q
Sbjct: 149 MNMKIFVDTDADVRLSRRIQRDTVERGRNIQNVLEQ 184