Miyakogusa Predicted Gene

Lj0g3v0350559.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0350559.2 CUFF.24083.2
         (241 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G59140.1 | Symbols: ATMRP14, MRP14, ABCC10 | multidrug resist...    85   4e-17

>AT3G59140.1 | Symbols: ATMRP14, MRP14, ABCC10 | multidrug
           resistance-associated protein 14 |
           chr3:21863519-21868701 REVERSE LENGTH=1453
          Length = 1453

 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 106/247 (42%), Gaps = 34/247 (13%)

Query: 1   MEDFWSMTCGDSGCSETGVEPFCHDFRLLKNPSTCINHLLTICFDXXXXXXXXXX-XXHK 59
           +E++W+  CG+   S                 S C    L ICF              HK
Sbjct: 2   IENYWTSFCGNHHTS-----------------SNCTVRFLQICFGITLSFLTLCICLFHK 44

Query: 60  CLSGPIRGPIRAERLSKLQLVSAITNGSLGMLHLCIGIWVLEEKLRRMHSALPLNWWLLE 119
                   P R  +   L+LVSA+ NG +G L L +GIWVL E     HS  PL  WL+ 
Sbjct: 45  ------EPPKRIHQFFCLRLVSALFNGIIGSLDLVLGIWVLREN----HSK-PLILWLVI 93

Query: 120 LFQGFTWVLIGLTLSLQLKQFQRAWLWMXXXXXXXXXXXXCALSISYAFSSRELSLKAAX 179
           L QGFTW+ I L + ++  + +++ L +              LS++ A    EL+++   
Sbjct: 94  LIQGFTWLFINLIICVRGTRIRKSSLRLLSIFSFFYGLVSSCLSVNNAVFGDELAVRTIL 153

Query: 180 XXXXXXXXXXXXXCTYKVCKREEEIDESLYAPLNS----QFNEVHPV-SYVTPFAKARFF 234
                          YK  + +E  + SLY PLN+     F+E     + V+ FAKA  F
Sbjct: 154 DVLLLPGSVLLLLSAYKGYRFDESGESSLYEPLNAGDSNGFSEKADFDNRVSQFAKAGLF 213

Query: 235 SRMSFWW 241
           S +SFWW
Sbjct: 214 STLSFWW 220