Miyakogusa Predicted Gene

Lj0g3v0349869.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0349869.1 Non Chatacterized Hit- tr|G1Q362|G1Q362_MYOLU
Uncharacterized protein (Fragment) OS=Myotis lucifugus,24.12,1e-18,no
description,Armadillo-like helical; UNCHARACTERIZED,NULL; ARM
repeat,Armadillo-type fold; seg,NUL,CUFF.24021.1
         (353 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G33945.1 | Symbols:  | ARM repeat superfamily protein | chr4:...   370   e-103

>AT4G33945.1 | Symbols:  | ARM repeat superfamily protein |
           chr4:16268119-16270514 FORWARD LENGTH=464
          Length = 464

 Score =  370 bits (950), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/361 (57%), Positives = 264/361 (73%), Gaps = 13/361 (3%)

Query: 6   RTISQEAFDEMVKENIDDLDMEPAEALQDAIQTLTLQGVDLSGIVTCVPGES----NPVI 61
           RTISQEAFD++V+EN++DL M+P+EAL+DA+ TL LQGVDL GI+TCVPGES    NPVI
Sbjct: 4   RTISQEAFDDLVRENVEDLGMDPSEALEDALYTLKLQGVDLFGIITCVPGESSVKDNPVI 63

Query: 62  ECLERLKRLDSEP-----XXXXXXXXXXXXXQIKDLCXXXXX-XXXXXTKNGAVELACSL 115
            CL+RLK  DS                     + +LC           TK+GAV+L CS+
Sbjct: 64  ACLDRLKEFDSVSIDGPLRDEVFDEISSLFKNLNELCSSQESGNAAIATKHGAVDLTCSI 123

Query: 116 CSKI---AGSDAALLSAFNAIASMLRDVQSTGAFQRSNGPRIIVDILNDNKQKIDILDSG 172
           CSKI     S+  L+  F A+A ++RD+QST  F+   GP I+VD+LND+    D+LD+G
Sbjct: 124 CSKIKISTRSNRVLVPCFKALAVLIRDIQSTERFRNCTGPNIVVDLLNDSSSDSDLLDAG 183

Query: 173 FHVVASAATGDEIVKESFMELKVDELVMEIMSIHKNTGIQNVYDAIRALLTPDDNRVVAS 232
           F VVA+AATG+E+VK+ FMELK+DEL++++++    T I+ +YDAI ALLTPDD RVVAS
Sbjct: 184 FAVVAAAATGNEVVKQLFMELKIDELILQVLNRESKTTIRALYDAICALLTPDDFRVVAS 243

Query: 233 QVYGYARKFSKIGIADAIVDSLRAGLSSPHLVSACITLKAIAVNDEICKSIADKGGIDSV 292
           QVYGYAR F+K+GIA A+ ++L+AG+ S  LVSA   LKAIAVNDEICKSIA+ GGID++
Sbjct: 244 QVYGYARTFAKLGIATALTEALQAGIGSDSLVSASTALKAIAVNDEICKSIAESGGIDTL 303

Query: 293 LRCIDDSGEQGNKAVAKVCCSLLSNLAGSDANKNAIVGKGGMDKLIKLSARCADDPSVLQ 352
           LRCIDDSGEQGNK  AK CCSLLS LAGSD+NK+ IV K G+DKLI L+ R +DDP V+Q
Sbjct: 304 LRCIDDSGEQGNKTAAKTCCSLLSKLAGSDSNKSTIVEKQGLDKLITLALRFSDDPLVIQ 363

Query: 353 E 353
           E
Sbjct: 364 E 364