Miyakogusa Predicted Gene

Lj0g3v0349819.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0349819.1 Non Chatacterized Hit- tr|A5B4E4|A5B4E4_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,49.58,7e-19,THIOREDOXIN-LIKE PROTEN 4A, 4B,NULL; THIOREDOXIN-LIKE
PROTEN 4A, 4B,mRNA splicing factor, thioredoxi,CUFF.24022.1
         (98 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G24730.1 | Symbols:  | mRNA splicing factor, thioredoxin-like...   159   4e-40
AT5G08290.1 | Symbols: YLS8 | mRNA splicing factor, thioredoxin-...    64   2e-11

>AT3G24730.1 | Symbols:  | mRNA splicing factor, thioredoxin-like U5
           snRNP | chr3:9030152-9030894 REVERSE LENGTH=159
          Length = 159

 Score =  159 bits (401), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 74/97 (76%), Positives = 88/97 (90%)

Query: 1   MNYMLTTLSKKKEVDSIIRDTIDKVLVLRFGRASDPVCLQLDQILSKAARDVSKFATVAL 60
           M+Y+L TL+ K+E+D +IRDTID+VLVLRFGR+SD VCLQ D+IL+K+ RDVSKFA VAL
Sbjct: 9   MSYLLKTLTTKEEIDRVIRDTIDEVLVLRFGRSSDAVCLQHDEILAKSVRDVSKFAKVAL 68

Query: 61  VDVDSPDIQVYVKYFDITLIPSTMFFFNAHHMKMDSG 97
           VDVDS D+QVYVKYFDITL PST+FFFNAHHMK+DSG
Sbjct: 69  VDVDSEDVQVYVKYFDITLFPSTIFFFNAHHMKLDSG 105


>AT5G08290.1 | Symbols: YLS8 | mRNA splicing factor,
          thioredoxin-like U5 snRNP | chr5:2666043-2666936
          FORWARD LENGTH=142
          Length = 142

 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 6/99 (6%)

Query: 1  MNYMLTTLSKKKEVDSIIRDTIDKVLVLRFGRASDPVCLQLDQILSKAARDVSKFATVAL 60
          M+Y+L  L     VD  I    ++++V+RFG   D  C+Q+D++L+  A  +  FA + L
Sbjct: 1  MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61 VDV-DSPDIQVYVKYFDITLIPST-MFFFNAHHMKMDSG 97
          VD+ + PD     + +D    PST MFFF   H+ +D G
Sbjct: 61 VDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLG 95