Miyakogusa Predicted Gene

Lj0g3v0348579.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0348579.1 CUFF.23932.1
         (96 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27460.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   109   4e-25
AT4G02820.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    58   1e-09
AT1G02370.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    58   2e-09
AT1G02150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    54   1e-08
AT4G21705.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    52   1e-07
AT1G60770.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    51   2e-07

>AT5G27460.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:9693262-9694815 REVERSE
           LENGTH=491
          Length = 491

 Score =  109 bits (272), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 56/91 (61%), Positives = 70/91 (76%)

Query: 6   TLANVDMKAGQLDKTILALENAEKKLSTFGCLGYFFLITIYASLKEKEGVLRLWEASKAV 65
           TLANV +K+G  +K  L LE+AEK L+    LGYFFLIT+YASL  KEGV+RLWE SK+V
Sbjct: 254 TLANVYIKSGFDEKARLVLEDAEKMLNRSNRLGYFFLITLYASLGNKEGVVRLWEVSKSV 313

Query: 66  GGRISCANYICMLTCLVKLGDIVQAKTIFME 96
            GRISC NYIC+L+ LVK GD+ +A+ +F E
Sbjct: 314 CGRISCVNYICVLSSLVKTGDLEEAERVFSE 344


>AT4G02820.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:1258581-1260265 FORWARD
           LENGTH=532
          Length = 532

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 56/92 (60%)

Query: 5   STLANVDMKAGQLDKTILALENAEKKLSTFGCLGYFFLITIYASLKEKEGVLRLWEASKA 64
           S L N+  K   ++K  LAL+  EK +S    + Y  LI+++A+L +K+GV   W+  K+
Sbjct: 270 SVLTNLYAKTDNVEKARLALKEMEKLVSKKNRVAYASLISLHANLGDKDGVNLTWKKVKS 329

Query: 65  VGGRISCANYICMLTCLVKLGDIVQAKTIFME 96
              +++ A Y+ M++ +VKLG+  QAK ++ E
Sbjct: 330 SFKKMNDAEYLSMISAVVKLGEFEQAKGLYDE 361


>AT1G02370.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:474516-476383 FORWARD
           LENGTH=537
          Length = 537

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 52/92 (56%)

Query: 5   STLANVDMKAGQLDKTILALENAEKKLSTFGCLGYFFLITIYASLKEKEGVLRLWEASKA 64
           S LA +  KAG  +K   AL++ E+K++      + FL+++YA + +   V R+WE+ K 
Sbjct: 282 SNLAAIYTKAGLYEKADSALKSMEEKMNPNNRDSHHFLMSLYAGISKGPEVYRVWESLKK 341

Query: 65  VGGRISCANYICMLTCLVKLGDIVQAKTIFME 96
               ++  +Y+ ML  + KLGD+   K IF E
Sbjct: 342 ARPEVNNLSYLVMLQAMSKLGDLDGIKKIFTE 373


>AT1G02150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:408779-410433 FORWARD
           LENGTH=524
          Length = 524

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 53/92 (57%)

Query: 5   STLANVDMKAGQLDKTILALENAEKKLSTFGCLGYFFLITIYASLKEKEGVLRLWEASKA 64
           ST+A + +K G+ +K   AL   E +++    + Y +L+++Y SL  K+ + R+W   K+
Sbjct: 279 STMATMYIKMGETEKAEDALRKVEARITGRNRIPYHYLLSLYGSLGNKKELYRVWHVYKS 338

Query: 65  VGGRISCANYICMLTCLVKLGDIVQAKTIFME 96
           V   I    Y  +++ LV++GDI  A+ ++ E
Sbjct: 339 VVPSIPNLGYHALVSSLVRMGDIEGAEKVYEE 370


>AT4G21705.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:11533257-11534817 REVERSE
           LENGTH=492
          Length = 492

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 47/85 (55%)

Query: 12  MKAGQLDKTILALENAEKKLSTFGCLGYFFLITIYASLKEKEGVLRLWEASKAVGGRISC 71
           +  G  D+ +  L+ +E +L      GY  LIT+YA L +K  VLRLW+  K V  R   
Sbjct: 243 IDGGDCDRAVELLKMSENRLEKKDGEGYNHLITLYARLGKKIEVLRLWDLEKDVCKRRIN 302

Query: 72  ANYICMLTCLVKLGDIVQAKTIFME 96
            +Y+ +L  LVK+  +V+A+ +  E
Sbjct: 303 QDYLTVLQSLVKIDALVEAEEVLTE 327


>AT1G60770.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:22366959-22368648 REVERSE
           LENGTH=491
          Length = 491

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 48/92 (52%)

Query: 5   STLANVDMKAGQLDKTILALENAEKKLSTFGCLGYFFLITIYASLKEKEGVLRLWEASKA 64
           S +A++ + AG   K   AL+  E K +      Y FLIT+Y  L +   V R+W + + 
Sbjct: 233 SNMASIYVDAGLSQKAEKALQELEMKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLRL 292

Query: 65  VGGRISCANYICMLTCLVKLGDIVQAKTIFME 96
              + S   Y+ M+  LVKL D+  A+T+F E
Sbjct: 293 AIPKTSNVAYLNMIQVLVKLNDLPGAETLFKE 324