Miyakogusa Predicted Gene

Lj0g3v0348479.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0348479.1 Non Chatacterized Hit- tr|C5YV75|C5YV75_SORBI
Putative uncharacterized protein Sb09g008006
(Fragment,73.33,1e-17,seg,NULL,CUFF.24084.1
         (125 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G47570.1 | Symbols:  | unknown protein; Has 30201 Blast hits ...   156   3e-39

>AT5G47570.1 | Symbols:  | unknown protein; Has 30201 Blast hits to
           17322 proteins in 780 species: Archae - 12; Bacteria -
           1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr5:19292869-19294666 REVERSE LENGTH=125
          Length = 125

 Score =  156 bits (394), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 84/125 (67%), Positives = 93/125 (74%)

Query: 1   MAGRLTNSASRILGGNGXXXXXXXXXXXXXXGIGPPVGKHIVPDKPLPANDELVWDNGTS 60
           MAGRL+  ASRI+GGNG              G+G PVGKHIVPDKPL  NDEL+WDNGT+
Sbjct: 1   MAGRLSGVASRIMGGNGVVARSVGSSLRQRAGMGLPVGKHIVPDKPLSVNDELMWDNGTA 60

Query: 61  LPEPCIDRIADTVGKYEALAWLCGGLSCFASLGLLAVWNDKASKIPFAPKVYPYDNLAAR 120
            PEPCIDRIADTVGKYEALAWL GGL  F  LGLLAV NDKASK+PF P+VYPYDNL   
Sbjct: 61  FPEPCIDRIADTVGKYEALAWLSGGLGFFVGLGLLAVLNDKASKVPFTPRVYPYDNLRVE 120

Query: 121 ICNQP 125
           +  +P
Sbjct: 121 LGGEP 125