Miyakogusa Predicted Gene
- Lj0g3v0347529.3
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0347529.3 Non Chatacterized Hit- tr|G7IUG6|G7IUG6_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,34.57,3e-19,seg,NULL; Nucleic acid-binding proteins,Nucleic
acid-binding, OB-fold-like; no description,Nucleic a,CUFF.23853.3
(165 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G05642.1 | Symbols: | Nucleic acid-binding, OB-fold-like pro... 59 2e-09
AT1G52950.1 | Symbols: | Nucleic acid-binding, OB-fold-like pro... 49 1e-06
>AT2G05642.1 | Symbols: | Nucleic acid-binding, OB-fold-like
protein | chr2:2098253-2100867 REVERSE LENGTH=532
Length = 532
Score = 58.5 bits (140), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 14 TWRILVKVIRAWKGQRLSGRKLAFTLEVVLMDNK---IHATIREGLIYRFERVLKEGHVY 70
T ++ V++ R W + K ++++L+D+K I A+IR L+ +F+ L+EG Y
Sbjct: 17 TCKVKVRIARLWAYHKKDRPKDIMGIDLLLVDDKGERIQASIRSQLLSKFQEKLEEGDCY 76
Query: 71 AITNFEVSFNAGPFMTDKHEFKINF 95
I NFE+S N G + H +KINF
Sbjct: 77 MIMNFEISDNGGSYRASSHPYKINF 101
>AT1G52950.1 | Symbols: | Nucleic acid-binding, OB-fold-like
protein | chr1:19725483-19728007 FORWARD LENGTH=566
Length = 566
Score = 49.3 bits (116), Expect = 1e-06, Method: Composition-based stats.
Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 9/149 (6%)
Query: 12 KETWRILVKVIRAWKGQRLSGRKLAFTLEVVLMD---NKIHATIREGLIYRFERVLKEGH 68
K +W I VK++ AW G +++ E++L D NKI A I++ + + +R +K GH
Sbjct: 17 KTSWCIQVKILHAWN-HYTKGSGMSY--EMMLADEDGNKIQAGIKKEHLLKLQRYVKIGH 73
Query: 69 VYAITNFEVSFNAGPFMTDKHEFKINFQMNIEVKPMNKASITIETY-TFVPLSXXXXXXX 127
I F V+ +G + + H ++IN Q + N +I+ E + V +
Sbjct: 74 WTIIEEFSVTKASGLYRSTTHPYRINIQSSTRFS--NSPTISDEIWLDLVNFNDVLSGTL 131
Query: 128 XXXXXXXVIGFLTGVGTERVIDKEYVKTK 156
VIG L VG +++D + TK
Sbjct: 132 DQNKLVNVIGQLVNVGEIQLLDVQGKPTK 160