Miyakogusa Predicted Gene

Lj0g3v0347529.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0347529.2 tr|Q2HVD7|Q2HVD7_MEDTR Nucleic acid-binding,
OB-fold, subgroup OS=Medicago truncatula GN=MtrDRAFT_AC,40.6,1e-18,no
description,Nucleic acid-binding, OB-fold; seg,NULL; DUF223,Domain of
unknown function DUF223,CUFF.23853.2
         (228 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G05642.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...    63   1e-10
AT1G52950.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...    50   1e-06

>AT2G05642.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr2:2098253-2100867 REVERSE LENGTH=532
          Length = 532

 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 3/85 (3%)

Query: 14  TWRILVKVIRAWKGQRLSGRKLAFTLEVVLMDNK---IHATIREGLIYRFERVLKEGHVY 70
           T ++ V++ R W   +    K    ++++L+D+K   I A+IR  L+ +F+  L+EG  Y
Sbjct: 17  TCKVKVRIARLWAYHKKDRPKDIMGIDLLLVDDKGERIQASIRSQLLSKFQEKLEEGDCY 76

Query: 71  AITNFEVSFNAGPFMTDKHEFKINF 95
            I NFE+S N G +    H +KINF
Sbjct: 77  MIMNFEISDNGGSYRASSHPYKINF 101


>AT1G52950.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr1:19725483-19728007 FORWARD LENGTH=566
          Length = 566

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 9/149 (6%)

Query: 12  KETWRILVKVIRAWKGQRLSGRKLAFTLEVVLMD---NKIHATIREGLIYRFERVLKEGH 68
           K +W I VK++ AW      G  +++  E++L D   NKI A I++  + + +R +K GH
Sbjct: 17  KTSWCIQVKILHAW-NHYTKGSGMSY--EMMLADEDGNKIQAGIKKEHLLKLQRYVKIGH 73

Query: 69  VYAITNFEVSFNAGPFMTDKHEFKINFQMNIEVKPMNKASITIETY-TFVPLSXXXXXXX 127
              I  F V+  +G + +  H ++IN Q +      N  +I+ E +   V  +       
Sbjct: 74  WTIIEEFSVTKASGLYRSTTHPYRINIQSSTRFS--NSPTISDEIWLDLVNFNDVLSGTL 131

Query: 128 XXXXXXXVIGFLTGVGTERVIDKEYVKTK 156
                  VIG L  VG  +++D +   TK
Sbjct: 132 DQNKLVNVIGQLVNVGEIQLLDVQGKPTK 160