Miyakogusa Predicted Gene

Lj0g3v0347529.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0347529.1 tr|G7L8V5|G7L8V5_MEDTR Replication factor A
protein OS=Medicago truncatula GN=MTR_8g088810 PE=4
SV=1,44.17,5e-18,seg,NULL; DUF223,Domain of unknown function
DUF223,CUFF.23853.1
         (145 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G05642.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...    52   1e-07

>AT2G05642.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr2:2098253-2100867 REVERSE LENGTH=532
          Length = 532

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 32/51 (62%)

Query: 5   GCKIHATIREGLIYRFERVLKEGHVYAITNFEVSFNAGPFMTDKHEFKINF 55
           G +I A+IR  L+ +F+  L+EG  Y I NFE+S N G +    H +KINF
Sbjct: 51  GERIQASIRSQLLSKFQEKLEEGDCYMIMNFEISDNGGSYRASSHPYKINF 101