Miyakogusa Predicted Gene

Lj0g3v0347359.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0347359.1 tr|B9GIS5|B9GIS5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_550441 PE=4
SV=1,53.85,0.0000000000002, ,CUFF.23843.1
         (420 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G53860.2 | Symbols: emb2737 | embryo defective 2737 | chr5:21...   679   0.0  
AT5G53860.4 | Symbols: emb2737 | embryo defective 2737 | chr5:21...   659   0.0  
AT5G53860.1 | Symbols: EMB64, emb2737 | embryo defective 2737 | ...   630   0.0  
AT5G53860.5 | Symbols: emb2737 | embryo defective 2737 | chr5:21...   622   e-178
AT5G53860.3 | Symbols: emb2737 | embryo defective 2737 | chr5:21...   525   e-149

>AT5G53860.2 | Symbols: emb2737 | embryo defective 2737 |
           chr5:21865353-21868576 FORWARD LENGTH=422
          Length = 422

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/422 (75%), Positives = 369/422 (87%), Gaps = 2/422 (0%)

Query: 1   MSRE--RLVKAVKRFVEVRYKVFSTRYGQNVIDILDFPIKLVLSPFTLAFDIAGSAPRGF 58
           MSR   RL++ V +F + ++K FSTRYGQ VIDILDFPIKLVLSPFTLAFDIAGSAPRGF
Sbjct: 1   MSRGPGRLIQNVTQFADAQFKQFSTRYGQQVIDILDFPIKLVLSPFTLAFDIAGSAPRGF 60

Query: 59  GVPELISKLSAASVFAIATLGTYDIALELGKKVICQRNCRTCNGWQALRCTMCRGSGRVH 118
           G+PE ISK+S  SVFA+ATLGTYDIAL+LGKKVICQR+C+TCNGWQALRCTMC+G+G VH
Sbjct: 61  GIPEFISKISYLSVFAVATLGTYDIALDLGKKVICQRDCKTCNGWQALRCTMCKGTGSVH 120

Query: 119 YQVKSCTLKRGEKATAESVADAIVDNRAELVHIPSSLDFQKPLPLKDCPTCDGTGVMGCT 178
           YQ+K   L+ GEK TA+ VADAIV+NRAELVH+PSS +   PLP KDCPTCDGTG M CT
Sbjct: 121 YQIKDYNLRSGEKPTADCVADAIVENRAELVHLPSSFNHSAPLPSKDCPTCDGTGAMSCT 180

Query: 179 ECKHKLQVRISADDIMEPPWQAYNVLEKMDYPYEHIRHSMKDPGIAAFWLITLPQIMGGF 238
           ECK+KLQVRISADDIMEPPW+AYNVL+KMDYPYEHI HSMKDP IA FWLITLPQI+GGF
Sbjct: 181 ECKNKLQVRISADDIMEPPWKAYNVLKKMDYPYEHIVHSMKDPSIANFWLITLPQIVGGF 240

Query: 239 TYDDDVKQNIWSQYKESMRYDQLRDVVAKRKPGWEYLQDALISIDPSRARDDPVIVKNVP 298
            YD+DVK+ IW QY+ESMRYDQLRD+VAKR PGWEYLQDAL+SIDP RAR+DPVIVKNVP
Sbjct: 241 DYDEDVKKKIWWQYEESMRYDQLRDLVAKRNPGWEYLQDALVSIDPVRAREDPVIVKNVP 300

Query: 299 YFKAKKALEAEVMKLDPPPRPPTWGELDLPLSASSWSEQDLKDPDKFYEMTVLLNAQREI 358
           Y+KAKK+LEAEV KL+PPPRP  WGEL+LPL+ SSWSE+DLK+P K YE TVLLNAQREI
Sbjct: 301 YYKAKKSLEAEVTKLNPPPRPQNWGELNLPLNISSWSEEDLKNPAKLYEKTVLLNAQREI 360

Query: 359 SDKILDAQWETKWRQEKLNKMVEEKLQPYIQNTDSAVLSETILLKPQNQDNKRPRRRRWF 418
           +DKILDAQWE KWRQEK+ +M+E+K++PYIQ++  AVL + ILLK Q +  K  R+R+W+
Sbjct: 361 ADKILDAQWEAKWRQEKVEEMLEQKVRPYIQDSSMAVLPQPILLKSQKKAQKGSRQRKWW 420

Query: 419 FF 420
           FF
Sbjct: 421 FF 422


>AT5G53860.4 | Symbols: emb2737 | embryo defective 2737 |
           chr5:21865353-21868576 FORWARD LENGTH=459
          Length = 459

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/459 (69%), Positives = 369/459 (80%), Gaps = 39/459 (8%)

Query: 1   MSRE--RLVKAVKRFVEVRYKVFSTRYGQNVIDILDFPIKLVLSPFTLAFDIAGSAPRGF 58
           MSR   RL++ V +F + ++K FSTRYGQ VIDILDFPIKLVLSPFTLAFDIAGSAPRGF
Sbjct: 1   MSRGPGRLIQNVTQFADAQFKQFSTRYGQQVIDILDFPIKLVLSPFTLAFDIAGSAPRGF 60

Query: 59  GVPELISKLSAASVFAIATLGTYDIALELGKKVICQRNCRTCNGWQALRCTMCRGSGRVH 118
           G+PE ISK+S  SVFA+ATLGTYDIAL+LGKKVICQR+C+TCNGWQALRCTMC+G+G VH
Sbjct: 61  GIPEFISKISYLSVFAVATLGTYDIALDLGKKVICQRDCKTCNGWQALRCTMCKGTGSVH 120

Query: 119 YQVKSCTLKRGEKATAESVADAIVDNRAELVHIPSSLDFQKPLPLKDCPTCDGTGVMGCT 178
           YQ+K   L+ GEK TA+ VADAIV+NRAELVH+PSS +   PLP KDCPTCDGTG M CT
Sbjct: 121 YQIKDYNLRSGEKPTADCVADAIVENRAELVHLPSSFNHSAPLPSKDCPTCDGTGAMSCT 180

Query: 179 ECKHKLQVRISADDIMEPPWQAYNVLEKMDYPYEHIRHSMKDPGIAAFWLITLPQIMGGF 238
           ECK+KLQVRISADDIMEPPW+AYNVL+KMDYPYEHI HSMKDP IA FWLITLPQI+GGF
Sbjct: 181 ECKNKLQVRISADDIMEPPWKAYNVLKKMDYPYEHIVHSMKDPSIANFWLITLPQIVGGF 240

Query: 239 TYDDDVKQNIWSQYK-------------------------------------ESMRYDQL 261
            YD+DVK+ IW QY+                                     ESMRYDQL
Sbjct: 241 DYDEDVKKKIWWQYELNLLNPHLGWFCYTNIVSIPYLDRFVLWNWRHLWDTDESMRYDQL 300

Query: 262 RDVVAKRKPGWEYLQDALISIDPSRARDDPVIVKNVPYFKAKKALEAEVMKLDPPPRPPT 321
           RD+VAKR PGWEYLQDAL+SIDP RAR+DPVIVKNVPY+KAKK+LEAEV KL+PPPRP  
Sbjct: 301 RDLVAKRNPGWEYLQDALVSIDPVRAREDPVIVKNVPYYKAKKSLEAEVTKLNPPPRPQN 360

Query: 322 WGELDLPLSASSWSEQDLKDPDKFYEMTVLLNAQREISDKILDAQWETKWRQEKLNKMVE 381
           WGEL+LPL+ SSWSE+DLK+P K YE TVLLNAQREI+DKILDAQWE KWRQEK+ +M+E
Sbjct: 361 WGELNLPLNISSWSEEDLKNPAKLYEKTVLLNAQREIADKILDAQWEAKWRQEKVEEMLE 420

Query: 382 EKLQPYIQNTDSAVLSETILLKPQNQDNKRPRRRRWFFF 420
           +K++PYIQ++  AVL + ILLK Q +  K  R+R+W+FF
Sbjct: 421 QKVRPYIQDSSMAVLPQPILLKSQKKAQKGSRQRKWWFF 459


>AT5G53860.1 | Symbols: EMB64, emb2737 | embryo defective 2737 |
           chr5:21865353-21868576 FORWARD LENGTH=402
          Length = 402

 Score =  630 bits (1626), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 301/422 (71%), Positives = 351/422 (83%), Gaps = 22/422 (5%)

Query: 1   MSRE--RLVKAVKRFVEVRYKVFSTRYGQNVIDILDFPIKLVLSPFTLAFDIAGSAPRGF 58
           MSR   RL++ V +F + ++K FSTRYGQ VIDILDFPIKLVLSPFTLAFDIAGSAPRGF
Sbjct: 1   MSRGPGRLIQNVTQFADAQFKQFSTRYGQQVIDILDFPIKLVLSPFTLAFDIAGSAPRGF 60

Query: 59  GVPELISKLSAASVFAIATLGTYDIALELGKKVICQRNCRTCNGWQALRCTMCRGSGRVH 118
           G+PE ISK+S  SVFA+ATLGTYDIAL+LGKKVICQR+C+TCNGWQALRCTMC+G+G VH
Sbjct: 61  GIPEFISKISYLSVFAVATLGTYDIALDLGKKVICQRDCKTCNGWQALRCTMCKGTGSVH 120

Query: 119 YQVKSCTLKRGEKATAESVADAIVDNRAELVHIPSSLDFQKPLPLKDCPTCDGTGVMGCT 178
           YQ+K   L+ GEK TA+ VADAIV+NRAELVH+PSS +   PLP KDCPTCDGT      
Sbjct: 121 YQIKDYNLRSGEKPTADCVADAIVENRAELVHLPSSFNHSAPLPSKDCPTCDGT------ 174

Query: 179 ECKHKLQVRISADDIMEPPWQAYNVLEKMDYPYEHIRHSMKDPGIAAFWLITLPQIMGGF 238
                         IMEPPW+AYNVL+KMDYPYEHI HSMKDP IA FWLITLPQI+GGF
Sbjct: 175 --------------IMEPPWKAYNVLKKMDYPYEHIVHSMKDPSIANFWLITLPQIVGGF 220

Query: 239 TYDDDVKQNIWSQYKESMRYDQLRDVVAKRKPGWEYLQDALISIDPSRARDDPVIVKNVP 298
            YD+DVK+ IW QY+ESMRYDQLRD+VAKR PGWEYLQDAL+SIDP RAR+DPVIVKNVP
Sbjct: 221 DYDEDVKKKIWWQYEESMRYDQLRDLVAKRNPGWEYLQDALVSIDPVRAREDPVIVKNVP 280

Query: 299 YFKAKKALEAEVMKLDPPPRPPTWGELDLPLSASSWSEQDLKDPDKFYEMTVLLNAQREI 358
           Y+KAKK+LEAEV KL+PPPRP  WGEL+LPL+ SSWSE+DLK+P K YE TVLLNAQREI
Sbjct: 281 YYKAKKSLEAEVTKLNPPPRPQNWGELNLPLNISSWSEEDLKNPAKLYEKTVLLNAQREI 340

Query: 359 SDKILDAQWETKWRQEKLNKMVEEKLQPYIQNTDSAVLSETILLKPQNQDNKRPRRRRWF 418
           +DKILDAQWE KWRQEK+ +M+E+K++PYIQ++  AVL + ILLK Q +  K  R+R+W+
Sbjct: 341 ADKILDAQWEAKWRQEKVEEMLEQKVRPYIQDSSMAVLPQPILLKSQKKAQKGSRQRKWW 400

Query: 419 FF 420
           FF
Sbjct: 401 FF 402


>AT5G53860.5 | Symbols: emb2737 | embryo defective 2737 |
           chr5:21865353-21868576 FORWARD LENGTH=442
          Length = 442

 Score =  622 bits (1603), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 301/442 (68%), Positives = 353/442 (79%), Gaps = 22/442 (4%)

Query: 1   MSRE--RLVKAVKRFVEVRYKVFSTRYGQNVIDILDFPIKLVLSPFTLAFDIAGSAPRGF 58
           MSR   RL++ V +F + ++K FSTRYGQ VIDILDFPIKLVLSPFTLAFDIAGSAPRGF
Sbjct: 1   MSRGPGRLIQNVTQFADAQFKQFSTRYGQQVIDILDFPIKLVLSPFTLAFDIAGSAPRGF 60

Query: 59  GVPELISKLSAASVFAIATLGTYDIAL--------------------ELGKKVICQRNCR 98
           G+PE ISK+S  SVF    L      L                    +L   ++   +C+
Sbjct: 61  GIPEFISKISYLSVFVSWFLLKLIWRLLRLELMTLHWIWERKSYAKGQLQDLMLYSGDCK 120

Query: 99  TCNGWQALRCTMCRGSGRVHYQVKSCTLKRGEKATAESVADAIVDNRAELVHIPSSLDFQ 158
           TCNGWQALRCTMC+G+G VHYQ+K   L+ GEK TA+ VADAIV+NRAELVH+PSS +  
Sbjct: 121 TCNGWQALRCTMCKGTGSVHYQIKDYNLRSGEKPTADCVADAIVENRAELVHLPSSFNHS 180

Query: 159 KPLPLKDCPTCDGTGVMGCTECKHKLQVRISADDIMEPPWQAYNVLEKMDYPYEHIRHSM 218
            PLP KDCPTCDGTG M CTECK+KLQVRISADDIMEPPW+AYNVL+KMDYPYEHI HSM
Sbjct: 181 APLPSKDCPTCDGTGAMSCTECKNKLQVRISADDIMEPPWKAYNVLKKMDYPYEHIVHSM 240

Query: 219 KDPGIAAFWLITLPQIMGGFTYDDDVKQNIWSQYKESMRYDQLRDVVAKRKPGWEYLQDA 278
           KDP IA FWLITLPQI+GGF YD+DVK+ IW QY+ESMRYDQLRD+VAKR PGWEYLQDA
Sbjct: 241 KDPSIANFWLITLPQIVGGFDYDEDVKKKIWWQYEESMRYDQLRDLVAKRNPGWEYLQDA 300

Query: 279 LISIDPSRARDDPVIVKNVPYFKAKKALEAEVMKLDPPPRPPTWGELDLPLSASSWSEQD 338
           L+SIDP RAR+DPVIVKNVPY+KAKK+LEAEV KL+PPPRP  WGEL+LPL+ SSWSE+D
Sbjct: 301 LVSIDPVRAREDPVIVKNVPYYKAKKSLEAEVTKLNPPPRPQNWGELNLPLNISSWSEED 360

Query: 339 LKDPDKFYEMTVLLNAQREISDKILDAQWETKWRQEKLNKMVEEKLQPYIQNTDSAVLSE 398
           LK+P K YE TVLLNAQREI+DKILDAQWE KWRQEK+ +M+E+K++PYIQ++  AVL +
Sbjct: 361 LKNPAKLYEKTVLLNAQREIADKILDAQWEAKWRQEKVEEMLEQKVRPYIQDSSMAVLPQ 420

Query: 399 TILLKPQNQDNKRPRRRRWFFF 420
            ILLK Q +  K  R+R+W+FF
Sbjct: 421 PILLKSQKKAQKGSRQRKWWFF 442


>AT5G53860.3 | Symbols: emb2737 | embryo defective 2737 |
           chr5:21865353-21868576 FORWARD LENGTH=328
          Length = 328

 Score =  525 bits (1352), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 246/314 (78%), Positives = 278/314 (88%), Gaps = 2/314 (0%)

Query: 1   MSRE--RLVKAVKRFVEVRYKVFSTRYGQNVIDILDFPIKLVLSPFTLAFDIAGSAPRGF 58
           MSR   RL++ V +F + ++K FSTRYGQ VIDILDFPIKLVLSPFTLAFDIAGSAPRGF
Sbjct: 1   MSRGPGRLIQNVTQFADAQFKQFSTRYGQQVIDILDFPIKLVLSPFTLAFDIAGSAPRGF 60

Query: 59  GVPELISKLSAASVFAIATLGTYDIALELGKKVICQRNCRTCNGWQALRCTMCRGSGRVH 118
           G+PE ISK+S  SVFA+ATLGTYDIAL+LGKKVICQR+C+TCNGWQALRCTMC+G+G VH
Sbjct: 61  GIPEFISKISYLSVFAVATLGTYDIALDLGKKVICQRDCKTCNGWQALRCTMCKGTGSVH 120

Query: 119 YQVKSCTLKRGEKATAESVADAIVDNRAELVHIPSSLDFQKPLPLKDCPTCDGTGVMGCT 178
           YQ+K   L+ GEK TA+ VADAIV+NRAELVH+PSS +   PLP KDCPTCDGTG M CT
Sbjct: 121 YQIKDYNLRSGEKPTADCVADAIVENRAELVHLPSSFNHSAPLPSKDCPTCDGTGAMSCT 180

Query: 179 ECKHKLQVRISADDIMEPPWQAYNVLEKMDYPYEHIRHSMKDPGIAAFWLITLPQIMGGF 238
           ECK+KLQVRISADDIMEPPW+AYNVL+KMDYPYEHI HSMKDP IA FWLITLPQI+GGF
Sbjct: 181 ECKNKLQVRISADDIMEPPWKAYNVLKKMDYPYEHIVHSMKDPSIANFWLITLPQIVGGF 240

Query: 239 TYDDDVKQNIWSQYKESMRYDQLRDVVAKRKPGWEYLQDALISIDPSRARDDPVIVKNVP 298
            YD+DVK+ IW QY+ESMRYDQLRD+VAKR PGWEYLQDAL+SIDP RAR+DPVIVKNVP
Sbjct: 241 DYDEDVKKKIWWQYEESMRYDQLRDLVAKRNPGWEYLQDALVSIDPVRAREDPVIVKNVP 300

Query: 299 YFKAKKALEAEVMK 312
           Y+KAKK+LEAE  K
Sbjct: 301 YYKAKKSLEAESQK 314