Miyakogusa Predicted Gene

Lj0g3v0346729.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0346729.1 Non Chatacterized Hit- tr|I3T5L3|I3T5L3_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,76.21,0,seg,NULL; Tetraspannin,Tetraspanin/Peripherin; SUBFAMILY
NOT NAMED,NULL; TETRASPANIN,NULL,CUFF.23791.1
         (247 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20230.1 | Symbols:  | Tetraspanin family protein | chr2:8725...   239   1e-63
AT4G28770.2 | Symbols:  | Tetraspanin family protein | chr4:1421...   220   8e-58
AT4G28770.1 | Symbols:  | Tetraspanin family protein | chr4:1421...   219   2e-57
AT2G20740.1 | Symbols:  | Tetraspanin family protein | chr2:8935...   122   3e-28
AT1G32400.3 | Symbols: TOM2A | tobamovirus multiplication 2A | c...   108   2e-24
AT1G32400.2 | Symbols: TOM2A | tobamovirus multiplication 2A | c...   108   2e-24
AT1G32400.1 | Symbols: TOM2A | tobamovirus multiplication 2A | c...   108   2e-24
AT2G20740.2 | Symbols:  | Tetraspanin family protein | chr2:8935...   102   2e-22
AT2G20740.3 | Symbols:  | Tetraspanin family protein | chr2:8936...    56   3e-08

>AT2G20230.1 | Symbols:  | Tetraspanin family protein |
           chr2:8725762-8727388 FORWARD LENGTH=270
          Length = 270

 Score =  239 bits (610), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 128/269 (47%), Positives = 171/269 (63%), Gaps = 37/269 (13%)

Query: 1   MRPNCCHVSLAFVLKFLNFLQAFVGVSILLYSVWMLNQWDHRVP---------------- 44
           MR NCCHVS A  LK LNF+QAF+GVSI++YS+WML+++   +P                
Sbjct: 1   MRRNCCHVSFASTLKILNFVQAFIGVSIIIYSIWMLHEYSRHLPVDPPPSASSSSGTEIA 60

Query: 45  -------QPPLPHISLPRIVS-----AINVNSLNLPAPWFIYAFMGVGILMCCITFLGCI 92
                  + P+  ++   + S       N+ SL+LPAPWFIY+FM VGIL+C +TF+G I
Sbjct: 61  TSVSEPLKNPIDFVASIILGSNGGDHGFNLRSLDLPAPWFIYSFMAVGILVCIVTFIGFI 120

Query: 93  AAEMINGFCLCFYTLIITVLVLAEAALVGFIAIDHHWREDIPVDPTGQLESLQSFIEENQ 152
           AAE ING CLCFY+++ T+L+L EAALV +IAID HW +D+P DPTG+L SL++FIEEN 
Sbjct: 121 AAEAINGCCLCFYSILKTLLILLEAALVAYIAIDRHWEKDLPYDPTGELSSLRAFIEENI 180

Query: 153 DICRWVGIXXXXXXXXXXXXXXXXRATIST-RRADFDYEDEYDVRGRSWEPLLNPQSGQ- 210
           DIC+WVGI                RA +ST +    + ED+ + R R+W+PLL PQ  Q 
Sbjct: 181 DICKWVGIAVVAVQLLSLLLAMVLRAMVSTPKPELDEEEDDENPRSRTWDPLLGPQGNQA 240

Query: 211 PSGSGKVDNRGNHSDIWSSRMREKYGLNN 239
           P+GS K++N       WSSR+REKYGLN 
Sbjct: 241 PAGSSKIEN-------WSSRIREKYGLNQ 262


>AT4G28770.2 | Symbols:  | Tetraspanin family protein |
           chr4:14212177-14213896 REVERSE LENGTH=325
          Length = 325

 Score =  220 bits (560), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 132/288 (45%), Positives = 174/288 (60%), Gaps = 54/288 (18%)

Query: 1   MRPNCCHVSLAFVLKFLNFLQAFVGVSILLYSVWMLNQWDHRVP---------------- 44
           MR NCCHVS A +LK LNFLQAF+G+SI++YS+WML+Q++H VP                
Sbjct: 45  MRHNCCHVSFASILKILNFLQAFIGISIIIYSIWMLDQYNHHVPVDPPPSQPPAASSPDS 104

Query: 45  ------------------QPPLPHISLPRIV-------SAINVNSLNLPAPWFIYAFMGV 79
                             + P+  +S   IV       S  N+ SL+LPAPWFIY FM +
Sbjct: 105 SYSFSNSIIEINSVSDSLKNPIDFVS--GIVLGSGGGDSGFNLRSLDLPAPWFIYCFMAI 162

Query: 80  GILMCCITFLGCIAAEMINGFCLCFYTLIITVLVLAEAALVGFIAIDHHWREDIPVDPTG 139
           GIL+C +T +G IAAE ING CLCFY+++ T+L++ EAALVGFI ID HW +D+P DPTG
Sbjct: 163 GILVCIVTIIGFIAAEAINGCCLCFYSILKTLLIIIEAALVGFIVIDRHWEKDLPYDPTG 222

Query: 140 QLESLQSFIEENQDICRWVGIXXXXXXXXXXXXXXXXRATISTRRADFDYEDEYDV-RGR 198
           +L SL++FIEEN DIC+WVGI                RA +S R+++ D ED+++    R
Sbjct: 223 ELNSLRAFIEENIDICKWVGIVVVAIQLLSLLLALVLRAMVSPRQSELDDEDDFENPMSR 282

Query: 199 SWEPLLNPQSGQ-PSGSGKVDNRGNHSDIWSSRMREKYGLNNGDKQSH 245
           + + LL PQ+ Q  SGS  +DN       W SR+REKYGL N   QSH
Sbjct: 283 ARDNLLGPQANQTSSGSSNIDN-------WRSRIREKYGLIN--SQSH 321


>AT4G28770.1 | Symbols:  | Tetraspanin family protein |
           chr4:14212177-14213518 REVERSE LENGTH=281
          Length = 281

 Score =  219 bits (557), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 132/288 (45%), Positives = 174/288 (60%), Gaps = 54/288 (18%)

Query: 1   MRPNCCHVSLAFVLKFLNFLQAFVGVSILLYSVWMLNQWDHRVP---------------- 44
           MR NCCHVS A +LK LNFLQAF+G+SI++YS+WML+Q++H VP                
Sbjct: 1   MRHNCCHVSFASILKILNFLQAFIGISIIIYSIWMLDQYNHHVPVDPPPSQPPAASSPDS 60

Query: 45  ------------------QPPLPHISLPRIV-------SAINVNSLNLPAPWFIYAFMGV 79
                             + P+  +S   IV       S  N+ SL+LPAPWFIY FM +
Sbjct: 61  SYSFSNSIIEINSVSDSLKNPIDFVS--GIVLGSGGGDSGFNLRSLDLPAPWFIYCFMAI 118

Query: 80  GILMCCITFLGCIAAEMINGFCLCFYTLIITVLVLAEAALVGFIAIDHHWREDIPVDPTG 139
           GIL+C +T +G IAAE ING CLCFY+++ T+L++ EAALVGFI ID HW +D+P DPTG
Sbjct: 119 GILVCIVTIIGFIAAEAINGCCLCFYSILKTLLIIIEAALVGFIVIDRHWEKDLPYDPTG 178

Query: 140 QLESLQSFIEENQDICRWVGIXXXXXXXXXXXXXXXXRATISTRRADFDYEDEYD-VRGR 198
           +L SL++FIEEN DIC+WVGI                RA +S R+++ D ED+++    R
Sbjct: 179 ELNSLRAFIEENIDICKWVGIVVVAIQLLSLLLALVLRAMVSPRQSELDDEDDFENPMSR 238

Query: 199 SWEPLLNPQSGQ-PSGSGKVDNRGNHSDIWSSRMREKYGLNNGDKQSH 245
           + + LL PQ+ Q  SGS  +DN       W SR+REKYGL N   QSH
Sbjct: 239 ARDNLLGPQANQTSSGSSNIDN-------WRSRIREKYGLIN--SQSH 277


>AT2G20740.1 | Symbols:  | Tetraspanin family protein |
           chr2:8935788-8937292 FORWARD LENGTH=221
          Length = 221

 Score =  122 bits (305), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 94/186 (50%), Gaps = 14/186 (7%)

Query: 10  LAFVLKFLNFLQAFVGVSILLYSVWMLNQWDHRVPQPPLPHISLPRIVSAINVNSLNLPA 69
           L  +LK +N L   VG++++LY+VW++ QW  ++   P                  + P 
Sbjct: 9   LQSMLKLVNSLIGMVGIAMILYAVWLIRQWQEQMGNLPFA--------------DSDHPV 54

Query: 70  PWFIYAFMGVGILMCCITFLGCIAAEMINGFCLCFYTLIITVLVLAEAALVGFIAIDHHW 129
           PWFIY+F+G+G ++C +T  G IAAE +NG CL  Y   I +L + E  +V  I ++  W
Sbjct: 55  PWFIYSFLGLGAILCVVTCAGHIAAETVNGCCLYLYMGFIVLLTMVEGGVVADIFLNRDW 114

Query: 130 REDIPVDPTGQLESLQSFIEENQDICRWVGIXXXXXXXXXXXXXXXXRATISTRRADFDY 189
           ++D P DP+G       FIE N  IC+W+G+                +A        +D 
Sbjct: 115 KKDFPEDPSGAFHQFSKFIESNFKICKWIGLSIVCVQGLSVLIAMLLKALGPHPHRHYDS 174

Query: 190 EDEYDV 195
           +DEY+V
Sbjct: 175 DDEYNV 180


>AT1G32400.3 | Symbols: TOM2A | tobamovirus multiplication 2A |
           chr1:11689393-11690873 REVERSE LENGTH=280
          Length = 280

 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 111/200 (55%), Gaps = 10/200 (5%)

Query: 50  HISLPR-IVSAINVNSL---NLPAPWFIYAFMGVGILMCCITFLGCIAAEMINGFCLCFY 105
           ++S  R I+ A++++S    NLP  WFIY F+G+G+ +  I+  GC+     +  CL  Y
Sbjct: 55  YVSFGRPILMAVSLSSNIFDNLPKAWFIYLFIGIGVALFVISCCGCVGTCSRSVCCLSCY 114

Query: 106 TLIITVLVLAEAALVGFIAIDHHWREDIPVDPTGQLESLQSFIEENQDICRWVGIXXXXX 165
           +L++ +L+L E     FI  D+ WR+++P D TG  +++ +F+ EN  I RWV +     
Sbjct: 115 SLLLILLILVELGFAAFIFFDNSWRDELPSDRTGNFDTIYNFLRENWKIVRWVALGAVVF 174

Query: 166 XXXXXXXXXXXRATISTRRADFDYEDEYDV-RGRSWEPLLNPQSGQPSG---SGKVDNRG 221
                      RA  +   A++D +DEY   R +  +P +N Q+   +G   +  +D R 
Sbjct: 175 EALLFLLALMVRA--ANTPAEYDSDDEYLAPRQQIRQPFINRQAAPVTGVPVAPTLDQRP 232

Query: 222 NHSDIWSSRMREKYGLNNGD 241
           + SD WS+RMREKYGL+  +
Sbjct: 233 SRSDPWSARMREKYGLDTSE 252


>AT1G32400.2 | Symbols: TOM2A | tobamovirus multiplication 2A |
           chr1:11689393-11690873 REVERSE LENGTH=280
          Length = 280

 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 111/200 (55%), Gaps = 10/200 (5%)

Query: 50  HISLPR-IVSAINVNSL---NLPAPWFIYAFMGVGILMCCITFLGCIAAEMINGFCLCFY 105
           ++S  R I+ A++++S    NLP  WFIY F+G+G+ +  I+  GC+     +  CL  Y
Sbjct: 55  YVSFGRPILMAVSLSSNIFDNLPKAWFIYLFIGIGVALFVISCCGCVGTCSRSVCCLSCY 114

Query: 106 TLIITVLVLAEAALVGFIAIDHHWREDIPVDPTGQLESLQSFIEENQDICRWVGIXXXXX 165
           +L++ +L+L E     FI  D+ WR+++P D TG  +++ +F+ EN  I RWV +     
Sbjct: 115 SLLLILLILVELGFAAFIFFDNSWRDELPSDRTGNFDTIYNFLRENWKIVRWVALGAVVF 174

Query: 166 XXXXXXXXXXXRATISTRRADFDYEDEYDV-RGRSWEPLLNPQSGQPSG---SGKVDNRG 221
                      RA  +   A++D +DEY   R +  +P +N Q+   +G   +  +D R 
Sbjct: 175 EALLFLLALMVRA--ANTPAEYDSDDEYLAPRQQIRQPFINRQAAPVTGVPVAPTLDQRP 232

Query: 222 NHSDIWSSRMREKYGLNNGD 241
           + SD WS+RMREKYGL+  +
Sbjct: 233 SRSDPWSARMREKYGLDTSE 252


>AT1G32400.1 | Symbols: TOM2A | tobamovirus multiplication 2A |
           chr1:11689393-11690873 REVERSE LENGTH=280
          Length = 280

 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 111/200 (55%), Gaps = 10/200 (5%)

Query: 50  HISLPR-IVSAINVNSL---NLPAPWFIYAFMGVGILMCCITFLGCIAAEMINGFCLCFY 105
           ++S  R I+ A++++S    NLP  WFIY F+G+G+ +  I+  GC+     +  CL  Y
Sbjct: 55  YVSFGRPILMAVSLSSNIFDNLPKAWFIYLFIGIGVALFVISCCGCVGTCSRSVCCLSCY 114

Query: 106 TLIITVLVLAEAALVGFIAIDHHWREDIPVDPTGQLESLQSFIEENQDICRWVGIXXXXX 165
           +L++ +L+L E     FI  D+ WR+++P D TG  +++ +F+ EN  I RWV +     
Sbjct: 115 SLLLILLILVELGFAAFIFFDNSWRDELPSDRTGNFDTIYNFLRENWKIVRWVALGAVVF 174

Query: 166 XXXXXXXXXXXRATISTRRADFDYEDEYDV-RGRSWEPLLNPQSGQPSG---SGKVDNRG 221
                      RA  +   A++D +DEY   R +  +P +N Q+   +G   +  +D R 
Sbjct: 175 EALLFLLALMVRA--ANTPAEYDSDDEYLAPRQQIRQPFINRQAAPVTGVPVAPTLDQRP 232

Query: 222 NHSDIWSSRMREKYGLNNGD 241
           + SD WS+RMREKYGL+  +
Sbjct: 233 SRSDPWSARMREKYGLDTSE 252


>AT2G20740.2 | Symbols:  | Tetraspanin family protein |
           chr2:8935911-8937292 FORWARD LENGTH=180
          Length = 180

 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 68/128 (53%)

Query: 68  PAPWFIYAFMGVGILMCCITFLGCIAAEMINGFCLCFYTLIITVLVLAEAALVGFIAIDH 127
           P PWFIY+F+G+G ++C +T  G IAAE +NG CL  Y   I +L + E  +V  I ++ 
Sbjct: 12  PVPWFIYSFLGLGAILCVVTCAGHIAAETVNGCCLYLYMGFIVLLTMVEGGVVADIFLNR 71

Query: 128 HWREDIPVDPTGQLESLQSFIEENQDICRWVGIXXXXXXXXXXXXXXXXRATISTRRADF 187
            W++D P DP+G       FIE N  IC+W+G+                +A        +
Sbjct: 72  DWKKDFPEDPSGAFHQFSKFIESNFKICKWIGLSIVCVQGLSVLIAMLLKALGPHPHRHY 131

Query: 188 DYEDEYDV 195
           D +DEY+V
Sbjct: 132 DSDDEYNV 139


>AT2G20740.3 | Symbols:  | Tetraspanin family protein |
           chr2:8936713-8937292 FORWARD LENGTH=131
          Length = 131

 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 40/87 (45%)

Query: 109 ITVLVLAEAALVGFIAIDHHWREDIPVDPTGQLESLQSFIEENQDICRWVGIXXXXXXXX 168
           I +L + E  +V  I ++  W++D P DP+G       FIE N  IC+W+G+        
Sbjct: 4   IVLLTMVEGGVVADIFLNRDWKKDFPEDPSGAFHQFSKFIESNFKICKWIGLSIVCVQGL 63

Query: 169 XXXXXXXXRATISTRRADFDYEDEYDV 195
                   +A        +D +DEY+V
Sbjct: 64  SVLIAMLLKALGPHPHRHYDSDDEYNV 90