Miyakogusa Predicted Gene

Lj0g3v0346539.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0346539.1 tr|D2CJC6|D2CJC6_ELAGV Acetyl-CoA carboxylase
biotin carboxyl carrier protein subunit OS=Elaeis
guin,55.7,1e-16,seg,NULL; Biotin_lipoyl,Biotin/lipoyl attachment;
BIOTINYL_LIPOYL,Biotin/lipoyl attachment; SUBFAMIL,CUFF.23801.1
         (288 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G56130.1 | Symbols:  | biotin/lipoyl attachment domain-contai...   238   4e-63
AT3G56130.4 | Symbols:  | biotin/lipoyl attachment domain-contai...   225   3e-59
AT3G56130.2 | Symbols:  | biotin/lipoyl attachment domain-contai...   211   5e-55
AT3G56130.3 | Symbols:  | biotin/lipoyl attachment domain-contai...   184   4e-47
AT1G52670.1 | Symbols:  | Single hybrid motif superfamily protei...   142   3e-34
AT3G15690.2 | Symbols:  | Single hybrid motif superfamily protei...   142   3e-34
AT3G15690.1 | Symbols:  | Single hybrid motif superfamily protei...   112   2e-25

>AT3G56130.1 | Symbols:  | biotin/lipoyl attachment
           domain-containing protein | chr3:20826852-20829007
           FORWARD LENGTH=281
          Length = 281

 Score =  238 bits (607), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 144/289 (49%), Positives = 184/289 (63%), Gaps = 13/289 (4%)

Query: 1   MESSAAIRSFHCTVPHVRSSFEKVAVVPCHNARWNSKSGLFIQRLANDRMLINSQAKGRK 60
           M SSAA+ S H T+    S+    + V   +  W++     + R      L N  +  R 
Sbjct: 1   MASSAALGSLHQTL---GSAINSQSEVHSLSGNWSASGNSCVPRW----RLSNRNSNYR- 52

Query: 61  TLVSCAKAVEAINTAKSDASLDSTSQDSVEKKALQSATFPNGLEALVLEVCDETEIAELK 120
            LV  AKA ++  T  SD S D++  D   KK ++  TFP  +EALV E+CDETE+A L+
Sbjct: 53  -LVLRAKAAKSSTTTISDGSSDASVSDG--KKTVRRITFPKEVEALVHEMCDETEVAVLQ 109

Query: 121 VKVGEFEMHLKRNIGATKAPL--SNXXXXXXXXXXXKPMDESAPSTPQSLPPKSSPEKTN 178
           +KVG+FEM+LKR IGA   P+  ++           +PM++SA S P     K S EK +
Sbjct: 110 LKVGDFEMNLKRKIGAATNPIPVADISPTVAPPIPSEPMNKSASSAPSPSQAKPSSEKVS 169

Query: 179 PFVNASVQKSSKLAQLEASGTNNYVIISSPTVGLFRRGRTVKGKRQPPTYKEGDLIKEGQ 238
           PF N S  K +KLA LEASG+ NYV+++SP VG F+R RTVKGK+Q P+ KEGD IKEGQ
Sbjct: 170 PFKNTSYGKPAKLAALEASGSTNYVLVTSPAVGKFQRSRTVKGKKQSPSCKEGDAIKEGQ 229

Query: 239 VIGYLDQFGTGLPVKSDVAGEVLKLLVEDGEPVGYGDNLIAVLPSFHDI 287
           VIGYL Q GT LPV SDVAGEVLKLL +DG+ VGYGD L+AVLPSFHDI
Sbjct: 230 VIGYLHQLGTELPVTSDVAGEVLKLLSDDGDSVGYGDPLVAVLPSFHDI 278


>AT3G56130.4 | Symbols:  | biotin/lipoyl attachment
           domain-containing protein | chr3:20826852-20829007
           FORWARD LENGTH=274
          Length = 274

 Score =  225 bits (573), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 141/289 (48%), Positives = 179/289 (61%), Gaps = 20/289 (6%)

Query: 1   MESSAAIRSFHCTVPHVRSSFEKVAVVPCHNARWNSKSGLFIQRLANDRMLINSQAKGRK 60
           M SSAA+ S H T+    +S  +V  +   +  W++     + R      L N  +  R 
Sbjct: 1   MASSAALGSLHQTLGSAINSQSEVHSL---SGNWSASGNSCVPRW----RLSNRNSNYR- 52

Query: 61  TLVSCAKAVEAINTAKSDASLDSTSQDSVEKKALQSATFPNGLEALVLEVCDETEIAELK 120
            LV  AKA ++  T  SD S D++  D   KK ++  TFP  +EALV E+CDETE     
Sbjct: 53  -LVLRAKAAKSSTTTISDGSSDASVSDG--KKTVRRITFPKEVEALVHEMCDETE----- 104

Query: 121 VKVGEFEMHLKRNIGATKAPL--SNXXXXXXXXXXXKPMDESAPSTPQSLPPKSSPEKTN 178
             VG+FEM+LKR IGA   P+  ++           +PM++SA S P     K S EK +
Sbjct: 105 --VGDFEMNLKRKIGAATNPIPVADISPTVAPPIPSEPMNKSASSAPSPSQAKPSSEKVS 162

Query: 179 PFVNASVQKSSKLAQLEASGTNNYVIISSPTVGLFRRGRTVKGKRQPPTYKEGDLIKEGQ 238
           PF N S  K +KLA LEASG+ NYV+++SP VG F+R RTVKGK+Q P+ KEGD IKEGQ
Sbjct: 163 PFKNTSYGKPAKLAALEASGSTNYVLVTSPAVGKFQRSRTVKGKKQSPSCKEGDAIKEGQ 222

Query: 239 VIGYLDQFGTGLPVKSDVAGEVLKLLVEDGEPVGYGDNLIAVLPSFHDI 287
           VIGYL Q GT LPV SDVAGEVLKLL +DG+ VGYGD L+AVLPSFHDI
Sbjct: 223 VIGYLHQLGTELPVTSDVAGEVLKLLSDDGDSVGYGDPLVAVLPSFHDI 271


>AT3G56130.2 | Symbols:  | biotin/lipoyl attachment
           domain-containing protein | chr3:20827850-20829007
           FORWARD LENGTH=205
          Length = 205

 Score =  211 bits (536), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 113/187 (60%), Positives = 138/187 (73%), Gaps = 2/187 (1%)

Query: 103 LEALVLEVCDETEIAELKVKVGEFEMHLKRNIGATKAPL--SNXXXXXXXXXXXKPMDES 160
           L+ALV E+CDETE+A L++KVG+FEM+LKR IGA   P+  ++           +PM++S
Sbjct: 16  LQALVHEMCDETEVAVLQLKVGDFEMNLKRKIGAATNPIPVADISPTVAPPIPSEPMNKS 75

Query: 161 APSTPQSLPPKSSPEKTNPFVNASVQKSSKLAQLEASGTNNYVIISSPTVGLFRRGRTVK 220
           A S P     K S EK +PF N S  K +KLA LEASG+ NYV+++SP VG F+R RTVK
Sbjct: 76  ASSAPSPSQAKPSSEKVSPFKNTSYGKPAKLAALEASGSTNYVLVTSPAVGKFQRSRTVK 135

Query: 221 GKRQPPTYKEGDLIKEGQVIGYLDQFGTGLPVKSDVAGEVLKLLVEDGEPVGYGDNLIAV 280
           GK+Q P+ KEGD IKEGQVIGYL Q GT LPV SDVAGEVLKLL +DG+ VGYGD L+AV
Sbjct: 136 GKKQSPSCKEGDAIKEGQVIGYLHQLGTELPVTSDVAGEVLKLLSDDGDSVGYGDPLVAV 195

Query: 281 LPSFHDI 287
           LPSFHDI
Sbjct: 196 LPSFHDI 202


>AT3G56130.3 | Symbols:  | biotin/lipoyl attachment
           domain-containing protein | chr3:20827887-20829007
           FORWARD LENGTH=194
          Length = 194

 Score =  184 bits (468), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 100/168 (59%), Positives = 121/168 (72%), Gaps = 2/168 (1%)

Query: 122 KVGEFEMHLKRNIGATKAPL--SNXXXXXXXXXXXKPMDESAPSTPQSLPPKSSPEKTNP 179
           +VG+FEM+LKR IGA   P+  ++           +PM++SA S P     K S EK +P
Sbjct: 24  QVGDFEMNLKRKIGAATNPIPVADISPTVAPPIPSEPMNKSASSAPSPSQAKPSSEKVSP 83

Query: 180 FVNASVQKSSKLAQLEASGTNNYVIISSPTVGLFRRGRTVKGKRQPPTYKEGDLIKEGQV 239
           F N S  K +KLA LEASG+ NYV+++SP VG F+R RTVKGK+Q P+ KEGD IKEGQV
Sbjct: 84  FKNTSYGKPAKLAALEASGSTNYVLVTSPAVGKFQRSRTVKGKKQSPSCKEGDAIKEGQV 143

Query: 240 IGYLDQFGTGLPVKSDVAGEVLKLLVEDGEPVGYGDNLIAVLPSFHDI 287
           IGYL Q GT LPV SDVAGEVLKLL +DG+ VGYGD L+AVLPSFHDI
Sbjct: 144 IGYLHQLGTELPVTSDVAGEVLKLLSDDGDSVGYGDPLVAVLPSFHDI 191


>AT1G52670.1 | Symbols:  | Single hybrid motif superfamily protein |
           chr1:19615119-19617420 REVERSE LENGTH=274
          Length = 274

 Score =  142 bits (358), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 86/251 (34%), Positives = 138/251 (54%), Gaps = 19/251 (7%)

Query: 47  NDRMLINSQAKGRKTLVSCAKAVEAINT-----AKSDASLDSTSQDSVEKKALQSATFPN 101
           N R+ ++       +L +  ++V+AI       A+++A  D    D  +   + +   P 
Sbjct: 31  NQRLFVDQSPMKYLSLRTTLRSVKAIQLSTVPPAETEAIADVKDSDETKSTVVNTHLMPK 90

Query: 102 G--LEALVLEVCDETEIAELKVKVGEFEMHLKRNIGATKAPLSNXXXXXXXXXXXKPMDE 159
              +EAL+ E+ D + IAE ++K+G F +++ R +    +P              +P+  
Sbjct: 91  SSEVEALISEITDSSSIAEFELKLGGFRLYVARKLTDESSP---------PPQQIQPV-V 140

Query: 160 SAPSTPQSLPPKSSPEKTNPFVNASVQKSSKLAQLEA--SGTNNYVIISSPTVGLFRRGR 217
           +A +TP+ +    S   ++  +  +   S+   Q  A  +     VI+ SPTVG FRR +
Sbjct: 141 AASATPEGVHTNGSATSSSLAITKTSSSSADRPQTLANKAADQGLVILQSPTVGYFRRSK 200

Query: 218 TVKGKRQPPTYKEGDLIKEGQVIGYLDQFGTGLPVKSDVAGEVLKLLVEDGEPVGYGDNL 277
           T+KGKR P   KE D++KEGQV+ Y++Q G  +PV+SDV+GE++K+L EDGEPVGY D L
Sbjct: 201 TIKGKRTPTICKEKDIVKEGQVLCYIEQLGGQIPVESDVSGEIVKILREDGEPVGYNDAL 260

Query: 278 IAVLPSFHDIK 288
           I VLPSF  IK
Sbjct: 261 ITVLPSFPGIK 271


>AT3G15690.2 | Symbols:  | Single hybrid motif superfamily protein |
           chr3:5317108-5319435 FORWARD LENGTH=263
          Length = 263

 Score =  142 bits (358), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 88/238 (36%), Positives = 130/238 (54%), Gaps = 33/238 (13%)

Query: 60  KTLVSCAKAVEA--INTAKSDASLDSTSQDSVEKKALQSATFP--NGLEALVLEVCDETE 115
           KT     KAV+   + TA++ A+++      ++   L +   P  + +EALV E+CD + 
Sbjct: 47  KTTFGSVKAVQVSTVPTAETSATIEVKDSKEIKSSRLNAQLVPKPSEVEALVTEICDSSS 106

Query: 116 IAELKVKVGEFEMHLKRNIGATKAPLSNXXXXXXXXXXXKPMDESA---PSTPQSLPPKS 172
           IAE ++K+G F +++ RNI                       D S+   P TP      +
Sbjct: 107 IAEFELKLGGFRLYVARNIA----------------------DNSSLQPPPTPAVTASNA 144

Query: 173 SPEKTNPFVNASVQKSSKLAQLEASGTNN--YVIISSPTVGLFRRGRTVKGKRQPPTYKE 230
           + E  +P  N S   +S      AS   +   +I+ SP VG FRR +T+KGKR P + KE
Sbjct: 145 TTE--SPESNGSASSTSLAISKPASSAADQGLMILQSPKVGFFRRSKTIKGKRLPSSCKE 202

Query: 231 GDLIKEGQVIGYLDQFGTGLPVKSDVAGEVLKLLVEDGEPVGYGDNLIAVLPSFHDIK 288
            D +KEGQ++ Y++Q G   P++SDV GEV+K+L EDGEPVGY D LI++LPSF  IK
Sbjct: 203 KDQVKEGQILCYIEQLGGQFPIESDVTGEVVKILREDGEPVGYNDALISILPSFPGIK 260


>AT3G15690.1 | Symbols:  | Single hybrid motif superfamily protein |
           chr3:5317108-5319383 FORWARD LENGTH=247
          Length = 247

 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 114/218 (52%), Gaps = 33/218 (15%)

Query: 60  KTLVSCAKAVE--AINTAKSDASLDSTSQDSVEKKALQSATFP--NGLEALVLEVCDETE 115
           KT     KAV+   + TA++ A+++      ++   L +   P  + +EALV E+CD + 
Sbjct: 47  KTTFGSVKAVQVSTVPTAETSATIEVKDSKEIKSSRLNAQLVPKPSEVEALVTEICDSSS 106

Query: 116 IAELKVKVGEFEMHLKRNIGATKAPLSNXXXXXXXXXXXKPMDESA---PSTPQSLPPKS 172
           IAE ++K+G F +++ RNI                       D S+   P TP      +
Sbjct: 107 IAEFELKLGGFRLYVARNIA----------------------DNSSLQPPPTPAVTASNA 144

Query: 173 SPEKTNPFVNASVQKSSKLAQLEASGTNN--YVIISSPTVGLFRRGRTVKGKRQPPTYKE 230
           + E  +P  N S   +S      AS   +   +I+ SP VG FRR +T+KGKR P + KE
Sbjct: 145 TTE--SPESNGSASSTSLAISKPASSAADQGLMILQSPKVGFFRRSKTIKGKRLPSSCKE 202

Query: 231 GDLIKEGQVIGYLDQFGTGLPVKSDVAGEVLKLLVEDG 268
            D +KEGQ++ Y++Q G   P++SDV GEV+K+L EDG
Sbjct: 203 KDQVKEGQILCYIEQLGGQFPIESDVTGEVVKILREDG 240