Miyakogusa Predicted Gene

Lj0g3v0346499.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0346499.1 tr|G7IT89|G7IT89_MEDTR F-box protein OS=Medicago
truncatula GN=MTR_2g066150 PE=4 SV=1,36.67,2e-17,F_box_assoc_1: F-box
protein interaction domain,F-box associated interaction domain;
seg,NULL; FBA_1,CUFF.23776.1
         (384 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G17490.1 | Symbols:  | F-box and associated interaction domai...    51   2e-06
AT3G17560.1 | Symbols:  | F-box and associated interaction domai...    50   3e-06
AT3G25460.1 | Symbols:  | F-box and associated interaction domai...    49   6e-06

>AT3G17490.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr3:5984827-5985993
           FORWARD LENGTH=388
          Length = 388

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 86/240 (35%), Gaps = 64/240 (26%)

Query: 99  KYVLWNPATNEFRVTPPSPRESVPYYDPCITTHGFGYDH----VTDDFKVIRHITFYPEF 154
           + V+WNP T + R      R           T  FGYD+      +++K++R        
Sbjct: 120 RLVVWNPCTGQTRWIKRRNRRMCD-------TFAFGYDNSKSSCLNNYKILRVC------ 166

Query: 155 XXXXXXXXXXXXXXXXXXXXXXXXXRQDEPMIPDQFPCPTSQPFWEIYSLRSNSWRKLDT 214
                                       E +   QF        +EI+   SNSWR LD 
Sbjct: 167 ----------------------------EKIKGQQFE-------YEIFEFSSNSWRVLDV 191

Query: 215 DMPIIGSGSGMGYDIYTNGVCHWLGLNKCGLEIYLGSFNFSNEIFYTTPLPLDLADTRKQ 274
           +   I  G  +       G  +W          ++  F+FS+E F   PLP  + D    
Sbjct: 192 NPNCIIEGRSVS----VKGNSYWFA-TITKTHYFIRRFDFSSETFQKLPLPFHIFDYNDS 246

Query: 275 NYLAVLNESIALISIHE--ETTTFHIWILGEL--CAKESWTKLFTVGLGPLHGFGLPIGV 330
             L+   E   L  +H+  +T    IW+  ++      SW+K FTV L  ++    PI +
Sbjct: 247 RALSAFREE-QLSVLHQSFDTEKMDIWVTNKIDETTDWSWSKFFTVRL--INRLDYPISM 303


>AT3G17560.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr3:6006762-6008003
           FORWARD LENGTH=413
          Length = 413

 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 8/126 (6%)

Query: 200 EIYSLRSNSWRKLDTDMPIIGSGSGMGYDIYTNGVCHWLGLNK-CGLEIY-LGSFNFSNE 257
           +IY   SNSW+KLD   P    G    Y +   G  +W+ ++K  G+  Y L SF+FS E
Sbjct: 223 KIYDFSSNSWKKLDVITP---EGCLKSYGVSLKGNAYWVYMSKRRGVNDYSLLSFDFSTE 279

Query: 258 IFYTTPLPL-DLADTRKQNYLAVLNES-IALISIHEETTTFHIWILGELCAK-ESWTKLF 314
            F    +P    AD      L+V+ E  ++L+    ET    IW+  E+     SW K  
Sbjct: 280 SFQHLCVPFHQEADCFGTMALSVVREEHLSLLYQSCETLKVEIWMTKEIDTTFVSWKKFL 339

Query: 315 TVGLGP 320
           TV L P
Sbjct: 340 TVDLEP 345


>AT3G25460.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr3:9231581-9232666
           REVERSE LENGTH=361
          Length = 361

 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 8/148 (5%)

Query: 199 WEIYSLRSNSWRKLDTDMPIIGSGSGMGYDIYTNGVCHWLGL--NKCGLEIYLGSFNFSN 256
           +EIY + SNSWR LD  +      S    ++   G  +W     N    +++L  F+++ 
Sbjct: 171 FEIYEINSNSWRILDVTV----DSSLYIENVSLKGKTYWFATDGNDKPCDLFLICFDYTT 226

Query: 257 EIFYTTPLPLDLADTRKQNYLAVLNESIALISIHEETTTFHIWILGELCAKE--SWTKLF 314
           E F    LP  +   R  +   V  E ++++     T+   IW+  ++   +  SW K  
Sbjct: 227 ERFERLCLPYQIPYFRNTSLSVVKEEKLSVLLQPSLTSKTQIWVTNKIGEAKVLSWIKFL 286

Query: 315 TVGLGPLHGFGLPIGVGKMGDIFFRKEN 342
           TV L P   +G+   V +   +   ++N
Sbjct: 287 TVDLKPEIKYGIKFLVDEENKVLVYEQN 314