Miyakogusa Predicted Gene

Lj0g3v0345939.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0345939.1 tr|B9H2Q0|B9H2Q0_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_555746 PE=4
SV=1,87.89,0,GBP,Guanylate-binding protein, N-terminal;
GBP_C,Guanylate-binding protein, C-terminal; Interferon-i,CUFF.23774.1
         (290 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G46070.1 | Symbols:  | Guanylate-binding family protein | chr...   503   e-143
AT1G03830.2 | Symbols:  | guanylate-binding family protein | chr...   151   5e-37
AT1G03830.1 | Symbols:  | guanylate-binding family protein | chr...   151   6e-37
AT2G38840.1 | Symbols:  | Guanylate-binding family protein | chr...    72   5e-13

>AT5G46070.1 | Symbols:  | Guanylate-binding family protein |
           chr5:18683468-18688397 FORWARD LENGTH=1082
          Length = 1082

 Score =  503 bits (1294), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 234/290 (80%), Positives = 261/290 (90%)

Query: 1   MFVYNQMGGIDEAALDRLSLVTQMTKHIRVRASGGKSSASELGQFSPIFVWLLRDFYLDL 60
           MFVYNQMGGIDEA+LDRLSLVTQMTKHIRV+ASGG SS SELGQFSPIFVWLLRDFYLDL
Sbjct: 160 MFVYNQMGGIDEASLDRLSLVTQMTKHIRVKASGGTSSRSELGQFSPIFVWLLRDFYLDL 219

Query: 61  TEDNRKITPRDYLELALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLNNENDLQ 120
            EDNRKI+PRDYLE+ALRPVQGSG DI AKNEIRDSIRALFPDRECFTLVRPLNNE DLQ
Sbjct: 220 VEDNRKISPRDYLEIALRPVQGSGGDIGAKNEIRDSIRALFPDRECFTLVRPLNNEKDLQ 279

Query: 121 RLDQISMDKLRPEFRAGLDALTKFVFERTRPKQVGATMMTGPVLVGITESYLDAINHGAV 180
           RLDQIS++KLRPEF AGLDA TKFVFE+TRPKQ+G T+MTGP+LVGIT+SYLDA+N+GAV
Sbjct: 280 RLDQISLEKLRPEFGAGLDAFTKFVFEKTRPKQLGGTVMTGPILVGITQSYLDALNNGAV 339

Query: 181 PSISSSWQSVEEAERRRAYDSATEVYMSSFDRSIPPEEVALREAHEQAVQKSTAAFNASA 240
           P+I+SSWQSVEE E RRAYDS  E YM++FD+S  PEE ALRE HE+AV+K+ A FN++A
Sbjct: 340 PTITSSWQSVEETECRRAYDSGVEAYMAAFDQSKAPEEGALREEHEEAVRKALAIFNSNA 399

Query: 241 VGVGSARKKYAGLLQKFLKKAFEDYKKNAFMEADLQCSKAIQSMEKRLRA 290
           VG GSARKK+  LL K LKK FEDYKKNAFMEADL+C+  IQ MEK+LRA
Sbjct: 400 VGNGSARKKFEDLLHKDLKKKFEDYKKNAFMEADLRCTSTIQRMEKQLRA 449


>AT1G03830.2 | Symbols:  | guanylate-binding family protein |
           chr1:962128-966622 REVERSE LENGTH=1013
          Length = 1013

 Score =  151 bits (381), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 78/154 (50%), Positives = 104/154 (67%)

Query: 137 GLDALTKFVFERTRPKQVGATMMTGPVLVGITESYLDAINHGAVPSISSSWQSVEEAERR 196
           G+DAL KFV ER RPKQ G T++TGP L G T+++ + +N+  VP ISS WQ+VEE E R
Sbjct: 210 GVDALMKFVSERVRPKQRGDTIVTGPPLAGFTKAFSENVNNNIVPKISSLWQTVEELEGR 269

Query: 197 RAYDSATEVYMSSFDRSIPPEEVALREAHEQAVQKSTAAFNASAVGVGSARKKYAGLLQK 256
           RA D+ATEVYMSS +RS  P+E  L EAH +AV ++  AF  S++G    ++KY   L  
Sbjct: 270 RARDTATEVYMSSLERSETPDESMLLEAHNKAVVEALTAFCESSIGNVEVKQKYKRDLWS 329

Query: 257 FLKKAFEDYKKNAFMEADLQCSKAIQSMEKRLRA 290
           F  KA ED+K+ A +EA  +C  AI+ M K+L A
Sbjct: 330 FFAKALEDHKRVANVEAYSRCCNAIEDMGKKLWA 363


>AT1G03830.1 | Symbols:  | guanylate-binding family protein |
           chr1:962128-966622 REVERSE LENGTH=991
          Length = 991

 Score =  151 bits (381), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 78/154 (50%), Positives = 104/154 (67%)

Query: 137 GLDALTKFVFERTRPKQVGATMMTGPVLVGITESYLDAINHGAVPSISSSWQSVEEAERR 196
           G+DAL KFV ER RPKQ G T++TGP L G T+++ + +N+  VP ISS WQ+VEE E R
Sbjct: 188 GVDALMKFVSERVRPKQRGDTIVTGPPLAGFTKAFSENVNNNIVPKISSLWQTVEELEGR 247

Query: 197 RAYDSATEVYMSSFDRSIPPEEVALREAHEQAVQKSTAAFNASAVGVGSARKKYAGLLQK 256
           RA D+ATEVYMSS +RS  P+E  L EAH +AV ++  AF  S++G    ++KY   L  
Sbjct: 248 RARDTATEVYMSSLERSETPDESMLLEAHNKAVVEALTAFCESSIGNVEVKQKYKRDLWS 307

Query: 257 FLKKAFEDYKKNAFMEADLQCSKAIQSMEKRLRA 290
           F  KA ED+K+ A +EA  +C  AI+ M K+L A
Sbjct: 308 FFAKALEDHKRVANVEAYSRCCNAIEDMGKKLWA 341


>AT2G38840.1 | Symbols:  | Guanylate-binding family protein |
           chr2:16227329-16232115 FORWARD LENGTH=602
          Length = 602

 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 123/289 (42%), Gaps = 30/289 (10%)

Query: 1   MFVYNQMGGIDEAALDRLSLVTQMTKHIRVRASGGKSSASELGQFSPI-FVWLL-RDFYL 58
           + +YN    I EA + RLS   ++ +    R  G      E   F P   +WL+ RDF  
Sbjct: 151 VLIYNLPETIREADISRLSFAVELAEEFYGRVKG------EDVAFEPSKLLWLIQRDFL- 203

Query: 59  DLTEDNRKITPRDYLELALR--PVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLNNE 116
                 +  + +  ++ ALR  P +   ++I   N+IRDS+  +  +   F+L +P    
Sbjct: 204 ------QGKSVKQMVDEALRHVPNEDGNKNIDQVNQIRDSLAIMGDNSTAFSLPQPHLMR 257

Query: 117 NDLQRLDQISMDKLRPEFRAGLDALTKFVFERTRPKQVGATMMTGPVLVGITESYLDAIN 176
             L  L    +D     + A  D L K V    RPK V    + G   +   E  LDA+N
Sbjct: 258 TKLCDLKDEDLDS---TYVARRDQLKKLVASIIRPKIVQGKTLNGKEFISFLEQILDALN 314

Query: 177 HGAVPSISSSWQSVEEAERRRAYDSATEVYMSSFDRS-IPPEEVALREAHEQAVQKSTAA 235
            G +PS      S+ E   +   +   ++Y     R  +P  E +L+ AHE A  ++  A
Sbjct: 315 KGEIPSTG----SLVEVFNKDIVERCVKLYNEKMVRVRLPMSEESLQSAHEMAHNEAIKA 370

Query: 236 FNASAVGVGSARKKYAGLLQKFLKKAFEDYKKNAFMEADLQCSKAIQSM 284
           F+A   G   A+K         L +  ++  KN  +  + Q SK  +++
Sbjct: 371 FDAQHFGRQHAKKSVDQ-----LDEQMQEVYKNFVLANEYQSSKLCEAL 414